Array 1 8535-9357 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNS01000013.1 Escherichia coli strain KCJK6920 NODE_13_length_105338_cov_16.298676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8535 29 100.0 32 ............................. AACTCAATCACGGTTGAATCGATCCCCTCTGT 8596 29 100.0 32 ............................. TCATTATTTTATTTGCCTCGCCGCCCATTAAT 8657 29 100.0 32 ............................. CGCATTATTATGGCTACGGCTGGCGCGCTCGC 8718 29 100.0 32 ............................. CTGCTGTTCGAGCTGGTGGAGTGCTGCTATAG 8779 29 100.0 32 ............................. GTGTACCGCCGCGCCATCTCATACGTAACAGA 8840 29 100.0 33 ............................. GATTTATCGAATACCACCACGGCACCGGCAAAA 8902 29 100.0 32 ............................. ATACAGACACCCTTTGTTCTGCTGTGGCAAGA 8963 29 100.0 32 ............................. TATAGGCCGCCCCTCCAGTGCCAGTAGTACCT 9024 29 100.0 32 ............................. TACAGTGCTTTTGGTGTGACGGGAGGTAACGT 9085 29 100.0 32 ............................. ACGTTGCCAGCATGTCCGGGCGACTACTGAAC 9146 29 100.0 32 ............................. CGGGCCGTGCTGGTGGGCGGCGCAGAGCTGGA 9207 29 100.0 32 ............................. GCAGCACCACCCTGACTTTGCGGCTAAACGGA 9268 29 100.0 32 ............................. ATTAGCCCCGCCTGACCCTGCTTAATGTTCTG 9329 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATTCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCAGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCATGACTACGCGCAATTGCCAGCGCTCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1184-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNS01000021.1 Escherichia coli strain KCJK6920 NODE_21_length_78471_cov_17.417556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1183 29 100.0 32 ............................. GCTATCGGGTGTGGATACCGCTTTCGAGGCGT 1122 29 100.0 32 ............................. ACTGACATTGTCAGCCACAACCTTACAGCGTG 1061 29 100.0 32 ............................. TTATCGCGGCGCTGGCTGCCGCTGGCGTAGCC 1000 29 100.0 32 ............................. TTTCTGGCGACAGTATCGATTCTGACACGATA 939 29 100.0 32 ............................. GAATAGCATGAATGACGCGCTAGAGCGGGCTT 878 29 100.0 32 ............................. GGGATTGGCCCCAACCGCTAACCACGAGGTTT 817 29 100.0 32 ............................. ACATAGCAACAGGACTAACTTTATGGTCAGCC 756 29 100.0 32 ............................. GCCAAAAACAACATGATCCTGGCTCCCGGTCA 695 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 634 29 100.0 32 ............................. CCTGCTGGCGGATATTGGATATTTTTACCGCG 573 29 100.0 32 ............................. ATATTCCTCAGCATCTCGTCCCTCTCCATAGT 512 29 100.0 32 ............................. CCCGGCAACAATAATTGCCTCGATTTGATAAT 451 29 100.0 32 ............................. AAAGTAAATACTAAAAGATCTTCGTCAGAGAA 390 29 100.0 32 ............................. ATTCAATACCCGATAACCGCACGATCCGCCGC 329 29 100.0 32 ............................. CATTCGCAACGGTAGGAATTGTGATGGCGGCA 268 29 100.0 32 ............................. GGATAGAAACTGCGCTCGCGGCGTACCAGATA 207 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 146 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTCCCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTCGCTGGAGTGAAAATTATTGCGGCAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCATAATAGTTCCCCATGCCAGATAAGTTCACAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //