Array 1 15267-16392 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBP01000014.1 Escherichia coli strain MOD1-EC6166 MOD1-EC6166_14_length_111393_cov_20.0958, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15267 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 15328 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 15389 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 15450 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 15511 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 15572 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 15633 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 15694 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 15755 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 15816 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 15877 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 15938 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 15999 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 16060 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 16120 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 16181 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 16242 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 16303 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 16364 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAATACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1903-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBP01000017.1 Escherichia coli strain MOD1-EC6166 MOD1-EC6166_17_length_95028_cov_17.791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1902 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1841 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1780 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 1719 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 1658 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 1597 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 1536 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 1475 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1414 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1353 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1292 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1231 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1170 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1109 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1048 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 987 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 926 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 865 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 804 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 743 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 682 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 621 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 560 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 499 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 438 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 377 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 316 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 255 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //