Array 1 233-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCW01000148.1 Prevotella copri strain iAQ1179 NODE_229_length_3936_cov_3.40119_ID_591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 232 32 100.0 37 ................................ GGGATTGGCATTTTCTGGTTGTGGTTCGCTCTCTAGC 163 32 96.9 37 ..A............................. TGATAGGGCATTTTTTAGATGTGGTTCTCTGTCAGAT 94 32 96.9 0 .....T.......................... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 38 ATTGTCATCCCTGCTAGTGTTACTAGCATTGG # Left flank : TGGATGATTTCGATGAAACGATAGATGATTTTTCATTGGCAAGCATCGCCTTGTCATTAAAGGCTATCTCGATGAAATCTACTTTGTTAGATACCTATGGCGCCTCAGACAGACTTCTCTTCTCAGAAAATGATTATCGCAATCCTTCAAATAGCAAGGTAATATCTGCCCTGCAGGAATTGATGTGTGATAAGGATTTCTGTACACTTTACTCTCTTTTCATGCTTGCATTGGCAAGAAAGGAGCTTTCAGCATGTTCTTTTAGATTGTTTATTGGCGAAAAGCCTAATATAACTCCTGTGATGAATGAAGATTTATCGACTGAAATAACAAAAGAAGAGTTAAAAGAAGCTTTTGTTGATGAATGGGGAGCGAAATATAGCAAAGATGGAAGAAAATTGTTGAAAGTTCCAAAAGAACTAAGTGGAGCTTATCCGGTCAAAGAGGGGACTAGAATAATATGTAATGGTGCATTTTGGCATTGTAGCTCTCTGGCAGAA # Right flank : GTAGAACTGCTTTTTATGGTTGTCGTTCTCTGTCTAAGATAGTCATCCCTTCTAGTGTTACTA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCATCCCTGCTAGTGTTACTAGCATTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 14773-17091 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCW01000247.1 Prevotella copri strain iAQ1179 NODE_41_length_23101_cov_4.97518_ID_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14773 30 100.0 34 .............................. AATTGTTTTGGAAAGGCATTCATACAGAAGAAGA 14837 30 100.0 35 .............................. AAGTGGGGTGGAAGACTGCTGCGCTTGCATATTGA 14902 30 100.0 37 .............................. AGGATCAACAAGAATAAAAGAGAGGACAAATCGATGC 14969 30 100.0 36 .............................. ATGGTTCATGATGAAGCAAAGGCAAAGGGGCTTTAT 15035 30 100.0 37 .............................. TGATATTCGTCTGCCATTATTCTCCAAGCTTCGGGGA 15102 30 100.0 36 .............................. GCCACAAGGACGTAAGCACTCAGACCTCGCACCTGG 15168 30 100.0 37 .............................. AGATATTTGCTGATAAGGATGGGGATAGAAGCATTGA 15235 30 100.0 35 .............................. GAATTTGCATCCCAAATATAGAGAGTCGAAGGCAG 15300 30 100.0 36 .............................. AGGGGAAGAAGGAACGCTACCGCTGTAGATGTAGCA 15366 30 100.0 37 .............................. CGGGGGTTCTGATTTTTGTCGCACAATTATTAATATT 15433 30 100.0 34 .............................. CGCATCTCTCGACTGCCTCGGTGATGTCTTGAAT 15497 30 100.0 35 .............................. TATCTACCTCCTTTCCTTACCACGACAAACTACTT 15562 30 100.0 34 .............................. TTAGCACTCACTGTAAACCCAGTGCCCTTGGAAT 15626 30 100.0 37 .............................. TCGAGTTTAGAAATGAATTAAATCTGTAAAGATATGA 15693 30 100.0 34 .............................. TTGGCAAATGAAAACGTCTCAGAGCACAAAGAAA 15757 30 100.0 34 .............................. TAGGTAGTGATGAGGAATGTAATGGTGTACGTAT 15821 30 100.0 34 .............................. TCATACTGCTGTCTGTTGATGATATTGCCGACAA 15885 30 100.0 37 .............................. AGAAGTCACGGACCCGCCCTAGTGCCGGGAGCGGTGG 15952 30 100.0 35 .............................. ACAGCTGAAACGATGGTAGCCTTGCCCTTAGTATC 16017 30 100.0 35 .............................. ATAGTACGCGGATTGATGCATCATAGCAACAGGAC 16082 30 100.0 34 .............................. TTGTAGCATTAGAGCGCAACCAAGTACCCGCATT 16146 30 100.0 36 .............................. CGTTGAAATCCGCCCTCCTGGGTACGGGTACCCCCG 16212 30 100.0 35 .............................. TAGATAAACTGGGGGTCGTTATATTCACTAGAAGA 16277 30 96.7 36 ...................A.......... TAAGATAGGAGTAAGCAGCGCCGATTGTTGCCATCA 16343 30 100.0 38 .............................. ATAGCAGAGGTCACTCCACCAGCAATACTTCCAATAAG 16411 30 100.0 38 .............................. ATAGCAGAGGTCACTCCACCAGCAATACTTCCAATAAG 16479 30 100.0 35 .............................. AGACCAACAGAGTGAAGAAAACAATAAGTGTAACA 16544 30 100.0 35 .............................. TAATATTGGAATCTTTAGACATATTTTAAATACCT 16609 30 100.0 35 .............................. AGGCATAATGTCGTGGTACGTCTTCTTGATGTCGT 16674 30 100.0 35 .............................. GGACAACAACGAGGACCTGATTATCTCTATCGAGA 16739 30 100.0 33 .............................. GGTAGAGGGCTTCATCAAGGCAGAGCCTTACAC 16802 30 100.0 37 .............................. AACATGTAGGTAAGCAACTTCACCTCATCATCGCATT 16869 30 100.0 34 .............................. CACAGGAAGGCATCGGAAGTAGAGAAGGTCGTGA 16933 30 100.0 36 .............................. TTCCGCTTACTGCAGAAGAGTATGTGGCTAGCAATC 16999 30 100.0 34 .............................. AAGGAAGCGAAAGGCTAGTGTTTTTCATAAGTAT 17063 29 86.7 0 .......................-..C.TC | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.5 35 GTTCTAATCGCACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTAGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTATGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGACTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTATTTTGCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCAGAAAAAATATCTTTAGGCATCGACATTTTTCTGAATGTTTTTTTGTATCTTTGCACCCACAAACCCATAGATTCTTAGGACATCTACGCCCAATACTTAACGG # Right flank : CTTTGAATGCTGGCTCGTAGCGGTCGTATTTCTTCACCCACTGCTGCATGTTGTCACTCTTAGCTATGCGAGTTGTTCCGCCGAAGTAAGAGAAGGCACCGGATATACCACCGAAGAAGTTCTCCATGGAAACGTTGTACATAGCTTTTGCAAATCCCAAACCGCTGTATGGCAGGATACAGACCAAGACGACAACCTTGGTTAGCTCATCTGTCTTCGGGTCAGTAAGCCACAGGGCATCGCCGGCGAAGTCAATCTGCATCTCTTCCCCAGGAATATAGGTGTTATGGAAGCTGAGGTTGTGTGAGTACTGATACTCACGGATTGACTTCTTGAACTGGGTGTATCCATATCCGTCGGGATGCTCCTTGTTGTATGATTCGTGCAGGGCTTGAATGGTGAGGTAGCGGTTATGTGACAAGTCTGACACATATTCAGGCAACAGCCCGTCCTGCACCTGACGTTGGGAGGATGGGGCTGCTGTGGGTTTGGACAACTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATCGCACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //