Array 1 63498-64381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTAF010000048.1 Pseudomonas aeruginosa strain Pa047c Pseudomonas_aeruginosa_Contig-48_353962bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63498 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 63559 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 63621 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 63682 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 63743 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 63804 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 63865 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 63926 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 63987 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 64048 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 64109 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 64170 29 96.6 32 ...............C............. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 64231 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 64292 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 64353 28 79.3 0 A..........A..C..-.....A....T | C [64357] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73554-75597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTAF010000048.1 Pseudomonas aeruginosa strain Pa047c Pseudomonas_aeruginosa_Contig-48_353962bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73554 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 73615 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 73677 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 73738 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 73799 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 73860 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 73921 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 73982 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 74043 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 74104 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 74165 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 74226 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 74287 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 74348 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 74409 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 74470 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 74531 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 74592 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 74653 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 74714 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 74775 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 74837 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 74898 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 74959 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 75020 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 75081 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 75142 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 75203 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 75264 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 75325 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 75386 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 75447 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 75508 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 75569 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //