Array 1 382572-381605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635493.1 Urinicoccus massiliensis strain FC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 382571 36 100.0 30 .................................... CTCCGTCTGTCGTTGTTAGGCCAGGTAGTG 382505 36 100.0 30 .................................... TGGAACTTCCGACGGGGCAAGCATTGTCTA 382439 36 100.0 30 .................................... GACGGATTTACCTGGACGAGTTTGCCAACC 382373 36 100.0 30 .................................... CCTGGAGGGGGCCATTGCCCTGGACGGGGG 382307 36 100.0 30 .................................... GAGGTCAAGGAGTACTTGACCAGCCTTGAT 382241 36 100.0 31 .................................... AGCAATTAGGCATAGATCCAATTGATTGTTT 382174 36 100.0 30 .................................... CGACCTAGGACCCAAGAGCCTAGAGAGCTA 382108 36 100.0 30 .................................... GACGGATTTACCTGGACGAGTTTGCCAACC 382042 36 100.0 31 .................................... CACCAGTAAGCTCAGTGATGATAAAGGCCAA 381975 36 100.0 30 .................................... TACTGTAACCGACGGAAAGATTTACTTAAA 381909 36 100.0 31 .................................... TATATCCGCCTGTTACTACGCCTACGGCAGC 381842 36 100.0 30 .................................... TCATTGATAAAGAGATGCCTCGGCAACTGA 381776 36 100.0 31 .................................... CAGGACCTAGGATGACTTTTTGGGAGTCTAT 381709 36 100.0 30 .................................... AAGAAATAAAGGAGGGAAGCCCCGCGGCGA 381643 36 86.1 0 .............C..............T...TGT. | GA,T [381611,381614] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTGTTTTGAATAGTACTTAAAC # Left flank : AGTGTTGAGGCAAAAATTGATAAACCAGTCAAGACTACTTTTTAAAAGAGAAAAAGATGACCAAGGCAAGAGGATTGAAGAATTCTCTTGCCAAATAGAAAGAAATGATCCTACAAATAGGGAGGCCCATGCAGCCAGACTTTATTTTAATACACTCTTTGGCCTACCTTTTTCTAGACAAGAAGAGACAGATATCAATGCAGGTTTAAATTATGGCTATAGCCTGCTACTGAGCATCTTTGCAAGAGAAATTGTTTTAAATGGTTGCCGGACAGAATTAGGGTTAATGCACCATAGCCAATTGAATAACTTTAACTTAGCCAGTGATTTGATGGAACCCTTTAGAGTTCTCGTTGATGAGATCGTACTGGAAAATCAAGAAGAAAAATTTAAACAAATTAAGAAAGCTATTTTAGCATTAGTTCAAAACACATATCCATATAAAGGACATTTGAATAGTACTTAAACCTATTACTACAACAAGATATACGCCTGGTCCA # Right flank : AAATGTTGGGGTGAGATTCATTCTCGCCCCTTTCTTATGCTCGAAAGACCATTAAAATGCGACTCTTAAAGTTCTCAAAATTCCGATACCCATAGGAAACCCGTTTAATCACTTTGATTTTGTTGTTAAAGCCTTCTGTTTGTCCATTGGTGATGCCTGTGGAAAAGGCGTTTAGGATTTCTTCTTTCCAGTTTTCATAGGCCCGAATACTGGCTTTAAATTCCTTTAATCCACTTTCTTTAGCAACCCACAGCCACTTGTCTAAGGCCTGTCTTGCTTCTTCTTTGCTGGAGGCATCTAAGACGTCATAAAAGCGTTCTTTTAAGAGATAAGCTTCTTTGATTTCCTTGTCTTGCCAAAGCATTAGTTCCAGCTTTTCTTTTTCTTCGGGGCTTAGCCGACTGCCTTTTTTCCGTAGGATGGACTTGGACCGTTTAAAGTAGAGGCGATACTTTGCATCCCTTGTCTTTTGTCGTGTCTTGCGGACATTCTCTAAGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATAGTACTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 646506-644868 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635493.1 Urinicoccus massiliensis strain FC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 646505 33 93.9 33 ...................T............T TATCTAAAGAGGCGTTAGTCCGCTGGTTCGTCA 646439 33 93.9 34 ...................T............T CAAAAGAATCAAGGACTAGGAATGAACAGTTAAA 646372 33 97.0 33 ...................T............. CTTACTACATCTTGTGGTTTATCTTGCTTTTTG 646306 33 93.9 34 ...................T............T CCCGGATAGGCAAAGAGTCCTATCTCGGGCCTTT 646239 33 93.9 33 ...................T............A TATCCTCGTAACCTCGACTTTATATTCTGCCGT 646173 33 93.9 33 ...................T............T GCCTATGATAAGGCGATAATTTGGTCTATGATG 646107 33 97.0 33 ...................T............. CACCTCCGCATGTTCTCCCCAGGTGTTGATTAG 646041 33 97.0 33 ................................T TTCTGCCAGGTCTTTAGATGCTAAATAGACCAT 645975 33 97.0 35 ................................C CTTTGACCCGGTGGTCATGCACATCCACGACGAGG 645907 33 97.0 34 ................................T TGTGTCCCAGGTCCACTTGTACTGCTCATTAAAG 645840 33 97.0 34 ................................C TTTCCGTCAATTGTGATTGTCTTTAGCATAATTA 645773 33 93.9 34 .............C..................C TTGATGATGGAGTGGACATCATAGACAAAGTTGT 645706 33 93.9 34 .............C..................A CCTTATCGTTAAGTTCCGCTGCTTCATAAAGAGA 645639 33 93.9 33 .............C..................T TTTGGAGTGTAGTTGCTACTTTGTAATTAAAAG 645573 33 100.0 33 ................................. TCCAGGAGCCATTGTAAATTCTTTTTGATATTT 645507 33 100.0 37 ................................. TACTTAGTCGCTTTTACAAATGCAACACCAGAAACCA 645437 33 100.0 33 ................................. TACAATCAATCGTAGACAGTATTAATATTTGGC 645371 33 97.0 34 ................................A AGAAGAAAAGTAATTAAGCTTTCATTATTTCCAG 645304 33 100.0 33 ................................. ACTATTACACACTATGCGAAGCTATGTATTGCC 645238 33 97.0 34 ................................T TGGTATTTTTTATAGAGCTTGTAGCCAAAAATAA 645171 33 90.9 34 .........T...C..................T TTCATTTTTCCCATCCTTAAACTTATCCGTGTTA 645104 33 93.9 37 .............C..................A TAGTCTTTTTCCCAGTCGGTCATTGCTTGCTCCTTTT 645034 33 93.9 34 .............C..................C GGATTGACCTGAGTGGTGACCTGGTCTGTCCTTA 644967 33 90.9 33 .........T...C..................A TTTCTCGCGTTTTTCATTTGCATTTGCGACCGC 644901 33 84.8 0 ....................AA.A.......AA | A [644873] ========== ====== ====== ====== ================================= ===================================== ================== 25 33 95.3 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATG # Left flank : GCATGTCCAGGCTCAACTTTTAAATGCCTATTTAAGAGGAGATATTGAATCCTATCCACCGTTTATTTGGGAGGGTTAAATGCAAGTATTGATTACTTATGATGTAGAAACAGTCAGTGCCCAGGGGCAAAAAAGACTAAGGCAAGTGGCTAAAGTATGCACAGATTATGGACAAAGAGTACAAAACTCCGTTTTTGAATTAAACATCTATCCAGCAGACCTGGTAAATATAAAAAATAAGCTGGAAAAAATAATTGATCCAAAAAAAGACTCCATTCGAATCTACAATTTAGGAAAACATTGGGAAAAAAGAATTGAAACGCTAGGAGTGGATCATTCCTATAATCCGGAAAAAGACCTCTTGATTTTATAGGATGAGAAGTCTAGCTGGACAGAAAAAAGCTAGACCTATCTCACAGAAAAAAGCAAGACGAGAGACAAAACTCTATAAAAAATGACTTAGCTGCAATAAAAAAGCCTAAAAATGGCTAAAAATTACA # Right flank : TTTTCCTTATACCAGGTCAAATTTCATATAAAAAAAGAGGGGTCAACCCTCTTTTTTTATCCCTATTAAATATCTTTGCCTAAGTGCCTTCATCTAAAATATCAATGCCTTCAATGCTAGAAAGTGGCAGCATCATAGGCTTGCCCTGGTATCTGATAAAAAACATATCTTCATCTTCTCCGATATCTTCACCAATTTCTAGTCCATTTCCTGAGGCAATAAAACTACTTCCATCTTTCAAGCAGATTCTTAATTTACCTGCATTTTCAGCTCTTATCCAATCAATCAAAATAATCCTCCGAAAAACTCACTTCATCTTTTAATACCACATAATGACACAGTCTTCCAAGTCTCTTTCCCCTTCTGCCATATCTCTTAGTCCATTTAATGCTTCAACGGCATAGGGATAGGTCTTATATTCTTTCTCATCTCTAGGGGATAAGTGGACTCTATAATCATCTAAATCTAAACAATTTAAGGCGACTGACCCCCTTTCTCCC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATG # Alternate repeat : GTCGCACCCCTCGTGGGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //