Array 1 337106-338849 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKF01000005.1 Cyclobacterium sp. SYSU L10180 NODE_5_length_338854_cov_61.0094_ID_7923, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 337106 30 100.0 36 .............................. TGGAAGGGGATAATAAAAATGTAGCTGATTACCGGG 337172 30 100.0 36 .............................. ACGTTATGCGCTTAAATGACATGGTAAAATATTACA 337238 30 100.0 36 .............................. AGACGAGGGGATATAATAGAGGGACATTTTTACCTG 337304 30 100.0 36 .............................. TAAAAACGCATGTACTGAAAATGGTGAATGGTCTTT 337370 30 100.0 35 .............................. GAGAAGCAGCGGTATTTAAGGGAAATATCTACATG 337435 30 100.0 36 .............................. ATCTTCGTAAATAGCTGTAAGCGGAAAAGAATCGGT 337501 30 100.0 36 .............................. ATCTATATTCCAGATAACAACGGCAATTAACCAGGT 337567 30 100.0 36 .............................. TCTCTTCCGCTTTCTTTTGCATTTCTGCGGAAAGAT 337633 30 100.0 35 .............................. TTTCGGATTGGCAGTATTTAGCAGATATTGTGATG 337698 30 100.0 37 .............................. TCTTGATAGAAGCGATTACCACGTTTTCAACAACATT 337765 30 100.0 37 .............................. GGAAATGGTAAGTTCTGGATTGAACGCCCGGCACCTG 337832 30 100.0 35 .............................. CCGCTATCTATTGCAGTTGACTGACTTCTGTTTAT 337897 30 100.0 36 .............................. ACCGGGATAGTTAGGAGCCTGCTTTAGTTGATCGTA 337963 30 100.0 34 .............................. TTTCGGGCCAACTATCGCCGCCCATTTTTCAAAC 338027 30 100.0 36 .............................. TATTTTAGATTTACAGTTCAGGAATGGCAAAATGGA 338093 30 100.0 36 .............................. GCAGGGTCTCCTGGCTTGTCCATGCCGCCCCCAATA 338159 30 100.0 37 .............................. ACTACTAAAATGGGTTTGTTATTAATCAAACCTCCTT 338226 30 100.0 36 .............................. AAAAACGAAACTACAGGAGTTTATCTTGACACAGAA 338292 30 100.0 36 .............................. TGTTCTTGGAGCCGTGCCTAATGCTGCGGTTTTGTC 338358 30 100.0 36 .............................. GTTCAATAGATCCAGATTCCCTTAGATCGGAAAGGA 338424 30 100.0 36 .............................. AACAAATCAATCACCGAATTATCAGCATGGGATTTA 338490 30 100.0 37 .............................. AAGCCTTTTAGCTTTTTGCGTTACATCGTTTGTGATT 338557 30 100.0 36 .............................. ACCTTAGAGGGGCCGACCTTTACGGGGCCGACCTTA 338623 30 100.0 37 .............................. AAATCAAGCAGTCTTTTACGTCCTGGGTAATATGGTC 338690 30 100.0 34 .............................. ATTACTCGTTTAATAACAGCTAATTTTGACCTAA 338754 30 100.0 36 .............................. AGTCTAGCAATGCTAAAGCAATGCTAAAGCAAAACT 338820 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 36 CCCTTAATCGCACCATACAGGAATTGAAAT # Left flank : CGAATCACACATTAACTAATTAGCATGTACATCATTTTGGTTTACGACATCGGCGAAAAGCGTGTTGGAAAGATGCTTAAGCTCTGCCGGCAATACTTGAATTGGATCCAGAACTCCGTGTTTGAAGGCGAAATCACAGAGGTAAAGTTGAAAGAACTTATCAGTCGGGCCAGGTTGTTTATGAAGGAAGAAGACGACAGTTTAATTATCTTTAAGAGCCGGGAGCAGAAGTGGTTGGAAAAGGAAATCATCGGCCAGGACAAAAACGACCTGGACACGTTTATTTAGGGTTTTGGTTGTCGATCGATGGATCAACGTGAATTTTTTACGGCATACCCCGCTACCAGGGCCATCAAAATCCGGGATGCAAGCTTTGAGGCGGGTTGTCGAAGGCAGGGAGAAATCCGGTTATTGGATACCGACAATCTCCGTGCAAAAAACCAAAGACAAAAGCCTTTATTTTACAGGAATTTGGCCTATTTTTGTTTTCAGGCCGACGG # Right flank : TACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 5-1532 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNKF01000018.1 Cyclobacterium sp. SYSU L10180 NODE_18_length_108941_cov_60.5516_ID_7949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 25 .............................. AGTCTAGCAATGCTAAAGCAAAACT Deletion [60] 60 30 100.0 35 .............................. TACACAATGGACACTACTGTTTTGGCAGTCGTAAA 125 30 100.0 36 .............................. ACTATCCCTAATATCAATTTCATGACCTTCAATAAT 191 30 100.0 36 .............................. TCTTTTTTTGAAGAGGCTCCGGCATTGGTTAAGCGA 257 30 100.0 36 .............................. TCGGTATTAGGTGCTAGATCATACGTATTGGTCAGG 323 30 100.0 36 .............................. ACAAACGAAAGGTATTCAAGAACTGGGATAAATGAT 389 30 100.0 35 .............................. CCTGTTATGTTCACAAAACATATTAAACATCCATC 454 30 100.0 36 .............................. ACAACATGAATGTTGAAGAAACGGCTATTACAGGCG 520 30 100.0 36 .............................. ACGGTTCAATTTCGAATGAATCATTTTAATACACCG 586 30 100.0 36 .............................. CACTTAGAGGGGGCAACGGTCGAACTATCCACCAAT 652 30 100.0 35 .............................. TGCAGTGAACAGCGCAAATCCTACCTGGCTTTAAA 717 30 100.0 36 .............................. TTATTTCTGAAAGTGTAGCCCTCATGTTTTCATTAG 783 30 100.0 27 .............................. CACCATACCAATACAGGTAACTAAACC Deletion [840] 840 30 100.0 36 .............................. AGGGCTTTCTCCACGGCATTTTTCTGCCAGCACAGC 906 30 100.0 36 .............................. ATATCGAAAAAGGGTTTTCTTACCTTAGACAAAACG 972 30 100.0 36 .............................. GGCCTTCTCTATGCGCTTTTCCTTGTTCTGTTCGGA 1038 30 100.0 37 .............................. AGAAAGCATGAACTCGAATCCGCTGAGTACAGAACTG 1105 30 100.0 36 .............................. ATCGAATACTTTGGAGAAACTGGGAAGATTGGATTA 1171 30 100.0 36 .............................. ATACACTCTGAACGAGTTCCTTCGAGCTATCAGAAA 1237 30 100.0 37 .............................. GTCCCTGTGCATGGCCAGCATCACGGGATTTTCACGG 1304 30 100.0 35 .............................. GTTGCTGCTTCCGCTTCAGCTTGGCCTCCGGCTTT 1369 30 100.0 37 .............................. GCACCTCCAGTACGATCTGTAGAACCAGAAATACATG 1436 30 100.0 36 .............................. TTACTTCAATACCCTTGACAATGGCAATGATGATAA 1502 30 80.0 0 .....................G.CC..GCG | A [1522] ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 35 CCCTTAATCGCACCATACAGGAATTGAAAT # Left flank : CTAAC # Right flank : GTTGAGAAAAGCCCGGGTGATGCTTTTTAGCGAGCACCTGTCCCAAGTAGCATAGCGAATCGGGAAGGCTGGATTGCAAGGCAGAGCAGAAAAAACGATCGCAATTGGAAAATCATCCGATTACTAACTCCTCCCGTTCTTACCAATCTGATATTTTTAAACCCAACCTTTCAGAACCTGGATAATACGGTTTGACCGGAAACCATTTGGACGGATTAACTGACGCAAAACTAAAAAAGAATAACTTTCCGGATTCTAATTTCCTGACGGAGGTTTTTCCCAGAAAGGGAATTCCTTATAGCAAAAGGTCAATGAACTATACCCAGCTAAATTAGGAAAAAGCATATCATAAAAATAAACCAGCGTTTCTCGCACCGCTTCCGAATCCTCATCCTCCGACATATCGCAAGCGGACAGGTATTCAGGGAAATAATAAATTGCATTTATAAAACTGAAAACGGTATTGGGATTTAGTATACCAAAGGTATCTCCTGCAACAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGCACCATACAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //