Array 1 52-686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGOO010000008.1 Streptomyces sp. ISL-12 ISL12_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. TCCGTGGCCGTGACGAGCCCGGACGTGGTCGA 113 29 100.0 32 ............................. CCGTAGCTGCCGGCGCCCTGCTGCTGGGGGAG 174 29 96.6 30 ............................C CCGTGAGACCGTCCTACGCGCGCGGGAGGT 233 29 100.0 32 ............................. GGTCCGGTACGTGCCGAACCCGCGCATGTACA 294 29 100.0 32 ............................. TTCGAGGAGGCCCGCCGCCTCGCCCAGCGAGC 355 29 96.6 32 ......T...................... ATCACCGTCCGGGCCGACACCACCCATCAGAC 416 29 100.0 32 ............................. CGGGAACGGGTCCGCCAGTACGGCAACGCCGT 477 29 100.0 32 ............................. CCCGCGACCGGGCGGCCGTCGCCCGCGTCCAG 538 29 96.6 32 .................A........... GAGTACGGTCCGGACCGCGCGGCCACGGACAT 599 28 89.7 31 .......T.........-....C...... GACACCCCCTGATCTGCGACGACTTGACCAT 658 28 75.9 0 ....T......AG........G..-..AC | G [675] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.9 32 GTCGACCCCGCGCCTGCGGGGATGCTCCG # Left flank : CGCCTGCGGGGATGCTCCGCTCGCCACCAAGGCGCCGGGCGCCCGCGGCCGG # Right flank : CTTCAAGGCGCTTTGATCCGGCTGCGCGATGGAGACAGTGCTTAGAAGGCGCTCGGCCTATCACGGTCCGCACTCGCTCTGACCTGCACCAACACCGCAATGTGACGGCCTGTCAGTAAGGCTGGGGGGCAGATGGGGGAACCGCTCTCCTTTCGGCAAGCCGGGGGACGCCGTAACCCCATGGGGTGATATGTCATCGCCCGCAGTACCTTCACACGATTAAAGGTCGTTGTGGAAACAATCTCTCCCTCTCCCGGCGTTGATGCCTTCGAACCGAGGAGGGGTAGGTGCCGGGCCTGAAGTGTTCCACATCACCGGTCGCGGCGTGACGGAGGTCGTGCCGCGTCTTGCTGAGGTTGAGGCCGATGTGCAGGGTCTCGTTGAGGCAAACATGGCGGCGTTGCTGGGGGTCAGTTTTCTGGCGAGCGAGTACAGCACCGGGCCGGTCCACGGCGGGCGTATCGACTCGCTGGGGCTGGATGAGAACGGGGCGCCCGTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCTGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 565-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGOO010000153.1 Streptomyces sp. ISL-12 ISL12_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 564 29 96.6 32 ............................C GATCGAGCGGGCGAGAGGTCACGCACCTGGTC 503 29 96.6 32 ............................C GGATGGACTTCCCGACGATGACGCCCCCATGG 442 29 100.0 32 ............................. TCACCCACGGAGAGAACGGCTGGCACTGCCAC 381 29 96.6 32 ............................T GTTCTCGCCGATGACCGTGCGACCGGCTCGGT 320 29 100.0 32 ............................. AGGCCGCGGCGCTGCTCGCGGGAGAGCGACGC 259 29 100.0 32 ............................. AACGACGGGGGCGAGGGGCGTGGGCTCGGGCA 198 29 100.0 32 ............................. CGGATCGGGAGAGTATGTGTACTCAGATTGAC 137 29 100.0 32 ............................. TCCTTCGCCATGCCCGTCTTGACCATCTGCCC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTCGACCCCGCGCCTGCGGGGATGCTCCG # Left flank : CCGGAGGGCACAGACTTCGAAGACACCGAAGCCAACCTCCTCTGGGACGAACACGTCGGTGCGGTGGCGGGCGGCACCAACTACGCCACTGAAGCAGACCTTTCGGTACACGGTATGACCGAGAACCACATCGCGATCATCGGGCCCGATCTCGCCGACACCGAGACCACCTCATGACCGTCATCATCCTCGTCGCCGCCCCGGAAGGACTCCGCGGCCACCTCACCCGATGGATGGTTGAAGCCAGCGCCGGCGTGTTCGTCGGCAACCCCAGCCGCCGTATCCGCGACCGCCTCTGGGAACTTCTGGCCACCCGCATCGGCGACGGCCAGGCCATCCTTATCGAACCCGCCTCCAACGAACAGGGATGGGCCGTACGCACCGCAGGCCGCGACCGCTGGCAGCCCGTCGACTTCGACGGGCTCATCCTCTCCGCCCGCCCCAAGAAGCAACCGAATGAAAACAGCCGCCCCGCCCGGTAAAACCCCAGGTCAGGAAGT # Right flank : GGTCCTCTGACCGGGAGGGCAGCATGCAGCACCGTCGACCCCGCGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCTGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12020-10526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGOO010000153.1 Streptomyces sp. ISL-12 ISL12_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12019 29 100.0 32 ............................. ACCAGGACGGCAGCTTCGAGGGCCTCGCCTGC 11958 29 100.0 32 ............................. CGGCTGGAGACCACCCTCGGCTGGGACGGCGA 11897 29 100.0 32 ............................. CGGGCGACGATCTCGGCGAAGTCGACCAGGTC 11836 29 100.0 32 ............................. TCATCTGCCCCGACTGCCACGCCGAAATCGGC 11775 29 96.6 32 ............................C TACGTCAGCATCACCCCCAGCGGGATCATGCG 11714 29 93.1 32 ......................C.....C CCGTACGGAGGTGCGGGCAGTGACGCACGGCC 11653 29 100.0 32 ............................. GCGTCAAGAGCGCTGAAGCGATCCTCGCCCTG 11592 29 100.0 32 ............................. GAGGAGGTGGCCGCCGTCCGCGCCGAGGGCGG 11531 29 100.0 32 ............................. TACACGGATCAGTCGACATCGCCGGAGGTTCA 11470 29 96.6 32 ............................C GTGAGAGAGGAGTCGGCTGCCGAGTCGTCACC 11409 29 96.6 32 .............T............... TTCGGTGGCGAGGTCCCGCAGCACCGACCGCT 11348 29 96.6 32 ............................C TGGGGGACCGGCCTCAAGGGCAGCCCCGAGTT 11287 29 96.6 32 ............................C CTGAACAAGGTGACTCTCAGCCGACGGTACTG 11226 29 100.0 32 ............................. ACCGCCATGAGAGGCCCTGGTTCCGCGCGCCC 11165 29 96.6 32 ............................C CGAACAGGACGCTGCATGAGCCCCGGCCGCCG 11104 29 100.0 32 ............................. CTGGCCGAGTGGCGGGCGTATGAGCAGATCGC 11043 29 100.0 32 ............................. TTCTGGGGCAACGGCGACCCGATGATGCAGCT 10982 29 100.0 32 ............................. GCGCACAACAGCGCCCGGGCGACGGCGGCGTC 10921 28 96.6 32 .....-....................... GCCGGGGAGGTGTCGGCATGAGCGTCCTGGTG 10861 29 100.0 32 ............................. CCGATCCGGGACGTGGAGACCGCCGTCCGTGA 10800 29 100.0 33 ............................. GGCCGCTGGGGCGGTACGCCGCTGAAGTTGGCA 10738 29 100.0 32 ............................. CGCATCTACTACGTCGTCAGCGCCGACTGGGA 10677 29 100.0 32 ............................. TGGCTTTCGAGGTTGGTGGAGTCGCGCCAGTA 10616 29 100.0 32 ............................. GTGAGGAACGCGCGCTCGACGGAGGCTGCCCA 10555 29 86.2 0 .......G..............CA....T | C [10540] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : TCCCGCCGGTCGCCGGCGGTGAGCCGGGCCAGCAGCACGTACTCGGTCACGCCCGGGTCCATGCGGTAGCGCTCGCCGCCGATCTGGAAGGCACCGCGGTCCGGACCCGGCTCCGGGTCCACGTTGACCCGCACCCCCGGCAGCATCGCCGCCATGTGGGCCGTCATCCGCCGGTTCGGACGCGTTCCAGGGGGCCCATCTTGAACTCAACTTCACGGCAAGGGCCTGACCTGCGTTAATGCGAGGCCCTCGCTTTGGTGGGGCTTCTGCAGCGAGGCGGGAATGCATGCGGTTGCGGCAGTTGCTGCTCCCACTGCCGCAACCGAAGGGCCGTTGACGAGACGCTGATGCGTGTACTGGTGGAGTCGGGCTGGATCGCTTGTCACACTGATCCCGTGATTTCTCTGCGCCTGCGGGATGTTGCCTGTGCCGTCGTCGGCTTCCCGAAACAACTAAATGAATTCAGCTACCTCGCCTGGTAAAGGCGCAGTTCAGCAAGT # Right flank : ACCGCAGTGGCTCCCTGGTGGCCTGAAGAACCTGGGAATGTTTTGGAAGGAGGCGGTCAGACAAGCACCGAGTCGTGGTTGCCGCGCTCCAACAAGTGATGGTGCACGGGTGTCTCCGCAGCTCACAACGTGTTGTCAGTGGTGGGTACTACATTCTGGCGCTCAGTTGGGTTGAGGGGTGGGGGCATGGTGGACCTTGGGAAGCTGGGCCAGCGTTACGACCTGTTCGTCGTGCGGGCTTTGGAGACTTTGTGGGGGAAGTCTCGGGAGCGGGCTGGGGGGCGTACGAATCTTCTGCTGGCGCATCTCTTGGACACCGCGGCGGTGGCGGAGCTGCTCTGGGACGGATTTCTCGCGCGTTCGACGAGGTCGGTGCTGGATGACATCGCGGGCGGGCCGGGACGCGGGCGGCGGTTGTTCGCTTGGTTGTGCGGTGTACACGATTGGGGAAAAGCGACGCCCGTGCATCAGCGGTTGTGGCCGGAGGGTGCGGAAGCTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2373-1342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGOO010000172.1 Streptomyces sp. ISL-12 ISL12_173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 2372 29 93.1 32 .................C..........A GCAGGTGCCGGCGGTGGAAGCGCCCGCCCTCG 2311 29 96.6 32 .................C........... CCCTACTACCGGTAGAGGGCCTCCGGCCGTCA 2250 29 96.6 32 .................C........... GACTTCACGGCGTCTCGCTGGAGTCGCTGCCG 2189 29 96.6 32 .................C........... ACGGCCACGGCAAGGGTGATGGTGATCAGGGC 2128 29 100.0 32 ............................. GGCCGGCGGGCTGAGGTCGCTGGACGGTGAGC 2067 29 100.0 32 ............................. GCCTGCAGGAACGTGGCCAGGACGCGTTCCAG 2006 29 100.0 32 ............................. GCGTAGCCGGGCCGGGAGCTGCCCCAGGCGGG 1945 29 100.0 32 ............................. ACCGGCGGCGAAGTCGCCTACGTCATCGCCGG 1884 29 100.0 54 ............................. CAGGGTCACGCCCACCTGGTCCGCATCGTGCTCCCCGCGCACCTGGTCCGCATC 1796 21 72.4 0 .....................-------- - Deletion [1776] 1796 29 100.0 32 ............................. GAATCCGTCGCCAAAGCGCGCGCGGACCGAGG 1735 29 100.0 32 ............................. GCGTCGCCCGGCCTCCAGACGATCGCGCCGCC 1674 29 100.0 31 ............................. CCCTTCCGACCAGCACAAACACCGTCTCTGT 1614 29 100.0 32 ............................. TGGGGTCAGCTCGGCGCCGGCCGAGGAGGTGC 1553 29 100.0 32 ............................. GGCATCAGGCCGTGCCACAGGGCCCGTACGGG 1492 29 96.6 32 .................A........... TTCTGCTTGTGCCGGGCCATCAGCCCGTCGTT 1431 29 89.7 32 ..............TA............T GCAGCGAGCAGGTAGTTCTGGTCCGGCATCGC 1370 29 93.1 0 .C............T.............. | ========== ====== ====== ====== ============================= ====================================================== ================== 18 29 96.4 31 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCCGGACACCGACGACGGGACCAATCCCGAGCCGTACACGGATCCGGAGACGCCCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTCCTGGAAATCTCCGCAGGCGTCTTCATCGGCAACCCCTCCGCACGCATCCGCGACCTGCTCTGGAACGAAGTCCAGCAGTACGCCGGGCAGGGCCGCGCCCTCCTCGCCCACACCACCGACAACGAGCAAGGCTTTACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTCATCCACCGCCCGAACGCCCAGACCACACCCGGCACCACTACACCCAAAAAGGGCTGGAGCAACGCCGCCAAGCGGCGACGCTACGGAAGCAGATGAAGCCCTTAATGTCGCCTTCGTCGCGTATATCGGACTCGATGAAAGTCATGCAGAACCGCCAATCGCTGTGACAACACCGCAGGTCGCGAAGT # Right flank : GACGAACCGCGTCCGCACCGCCACCCCGTATGACCAGCCAGGGCCCCGTCGGGTCATCCCCGTACCGGCGGGGCCTTTGTGTGTCCCCTATGCCACCATGCCCACACCCGATCACGCCGCCTTGGGGGGACTCCTGCGCACCCGCGCCACCACGATCACGACCGCCGCGCTGCTCCTCGTCGCGCTCACCGGTCCCTGATGCCAGGGTGACGATCCTGGCGAAGGAGATCCACGAGCACCATGCCTGCGCCACGTAAGTACCGGACGAACTTCGGGAGCGCGCGATCCGCGAGGTCCGCAGCACCGGCCGCCCGATCGTGCACGTCGCGAAGGACCTGGGCATCCACAAGGAGGCGCTGCGCGGCTGGGTCCGCCAGGACAAAGCCGACCGTGGCGAGCGAGATGACCGGCTCACCGCCGACGGACGTGGCGAACTGACTGCCCCGGCAGGCGTGCGGTGGTGGGCTCTTCGTCGTCCCTCGGAGTTCCGCCCGATCAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12910-15133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGOO010000172.1 Streptomyces sp. ISL-12 ISL12_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12910 29 100.0 32 ............................. CATGTATTTCGTGGTTGCGAGTTACGTGTACT 12971 29 100.0 32 ............................. CGTCCGCGTCTGCTCTTCGGCCTCGGCGAACA 13032 29 100.0 32 ............................. CTCCGTCCGTTGGCGCGGCGAGGTGTGCCACT 13093 29 100.0 32 ............................. GACCCGCGCCTCGCGGGTGCGACGATCTACAG 13154 29 100.0 32 ............................. ACGGTCACGCCGGTGGTGGTGCTGTTCGCGCG 13215 29 100.0 32 ............................. GAGTCCAACCTCAACAAGGTCCTCATCTACCG 13276 29 100.0 32 ............................. CAGACCGTCCCCGCCGCCGCCTGACCCGGCCA 13337 29 100.0 32 ............................. ATCTACGCACCTCGTCTTCTGAACCCCCCCGA 13398 29 100.0 32 ............................. GCCGTGTCCTCCCACCCTGGCGCGAGGTGGCC 13459 29 100.0 32 ............................. GGAGTGCTGAGATCAGGAGGCGAGCGGGAGGC 13520 29 100.0 32 ............................. AACTTGATGCCGACGGGGAGTTCGATGACGAA 13581 29 100.0 32 ............................. AGCCTGCCGGACTGGAAGGGCCCGGCCAGCAA 13642 29 96.6 32 ............................T TCCGGGTGGGTGTCTGACGGTTCGTCAGGTGA 13703 29 100.0 32 ............................. CCACCACCGGGCACGACTGCGGCGAAGCGCTC 13764 29 96.6 32 ............................G TTCCAGCGGGCAGTTGGGGGTGTGAGCTGGGG 13825 29 100.0 32 ............................. ATGGCTTGCCATACTGAAAGCACGAGCACAAA 13886 29 96.6 32 ............................T GACCGACTCACGCGCGGCCCGGACGGTCCCTG 13947 29 100.0 32 ............................. TGCTCGCGGATCTCAGCGACGCTCGGCAGCGA 14008 29 100.0 32 ............................. GAGGGCGATCGAGTACAGGGCGACAATCAGGC 14069 29 100.0 32 ............................. ACCTGGCCGTCCTGCTCGACGCCGCCCGCGAG 14130 29 100.0 32 ............................. GATATAGCGTCCTCCGGCTCCTGTGCCTTTAT 14191 29 100.0 32 ............................. CGGATGGCCAGGACGGGCTTCCGGTCGGCGCC 14252 29 100.0 32 ............................. TTGACGACGATGGGCGGGTGCGCAGGGAGGAA 14313 29 100.0 32 ............................. GCTCCGTGTCTGGGCCGCCATCGCTGAGACGA 14374 29 100.0 32 ............................. CGCAGCGTCTGCTCCGACGCCGCAGTGTTCTC 14435 29 100.0 32 ............................. GCCTTGAGCGCCCCGTCGTCCTGGACCAGGTG 14496 29 100.0 32 ............................. TCGATCTGCTCAGCCGTCCAGCGCGGAGCCTC 14557 29 96.6 32 ............................T CCCGGTCGGGGAGCTGCCACCCGATCTCGGTG 14618 29 100.0 32 ............................. GTCCAGCGCGCTCACCAGCAGGTCAGCCGGGC 14679 29 100.0 32 ............................. GGGCCGTCCTGTTCGTGGGGCCGGTACATCAC 14740 29 100.0 32 ............................. CCGAGGCCGAGTCATAGTCCAGCCCGACGTCG 14801 28 96.6 32 ....................-........ TTCTGACGGCACCGCTCGATCCGGGCGGTCGT 14861 29 100.0 32 ............................. CGCCCCGCCCCCGAGTAGTTCGGTGACGTCGA 14922 29 100.0 32 ............................. GCTTCGTAAGAGTTGATCAACAGGCTGTTGCA 14983 29 100.0 32 ............................. ATGCCGTGGGTGATCAACGACGGCCGCGTGCG 15044 29 100.0 32 ............................. CGCACCACGCCGGCCGTGGCGGCGCCCGCTCC 15105 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.5 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGCTACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCCCCGTCTCGGTCATGCTTCGCCCACACCGACAACACCGGCCCGGCAAGCCGCGCCCTCAGCCCCGCAGGGGCCGTCTCCTCCAACGCCATACAAGATCAGTACACGCAAGACGCTTTCCGGAATGGCCAGTTGAAGAAAGTGGACGAGACGAAGCAGCAGGACGGGTATGGGCGGACCGGGACCCTGTCCGAACGCGCCCAGGCAGACCTGCGCCTCCCGCATGGAGCGCATCTATACTCACAAGACGGTGCCGCCGGGAACGCCCAGCCCTGCTGCAGATGCTCCTGCGAACCGGGCACCCAGAGGCCGAGCCAGAGTCTCTGACATCAGGTAACTTGCCCTGGACTCCACACTGTCCACGACTCAGCGAGGATGACCCGATATGTCGGCTTCAGTGAAAGTCAGTGGAAACAGCACATCGCGGCCCTAAAACCGCAGGTCGGGAAGT # Right flank : TCGCTGTCGCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //