Array 1 46344-51070 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBT01000001.1 Xenorhabdus ehlersii strain DSM 16337 Xehl_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46344 29 100.0 32 ............................. ACCTGTATAAACTAGGCTATGACGGAGAGGAG 46405 29 100.0 32 ............................. CCTATCTCAGAACGCGACTGCGCATATGTGGT 46466 29 100.0 32 ............................. GGACACCTGACGCAATCTTGAACGAACCGGCG 46527 29 100.0 32 ............................. GGGATCACTTTGCTGTGTACCACCACTGGGAT 46588 29 100.0 32 ............................. TTCGAGATTAATCGCGTTATGGAAGAGTATTT 46649 29 100.0 32 ............................. TGCATCCTCTAATATTAGCTCAATACCTGCGG 46710 29 100.0 32 ............................. CGATAACCCTGTGGGTCACGGTCACGTACCGC 46771 29 100.0 32 ............................. ATTTTTATTCGGTGGTTCTATGGTTTGAGTGG 46832 29 100.0 32 ............................. TCCGTTTATTTCAATGCGAGTGACATTTTCGC 46893 29 100.0 32 ............................. CTCAAACAGAATGCGGTAATCACCCACCCTCA 46954 29 100.0 32 ............................. GCGGCAATTAATACTGTAGGAGATATGAGACT 47015 29 100.0 32 ............................. CCGGGACAGATAATTTCCGCATCCGCGATGAT 47076 29 100.0 32 ............................. GATGGTATCAAGTTAAAACTGCATGATCCGAA 47137 29 100.0 32 ............................. CACACATTTCTAGGCTACGAGGTTGTGGAGCG 47198 29 100.0 32 ............................. TCACCGAGATCGCATAGCTTGAACTGGATAAG 47259 29 100.0 32 ............................. GCTATGGCTTCCGCCTCTGTCAGTGGCGTGAA 47320 29 100.0 32 ............................. CCGACAGGCTTAATTGAGCACTTAATGAAGGT 47381 29 100.0 32 ............................. GTGGCTCTGATGATGACTATAAACAGTGGGCG 47442 29 100.0 33 ............................. CTAAGTCAGCGAATGTGGCTTTAATAGTTAATC 47504 29 100.0 32 ............................. CCTCGGTTGCTGTAACAACCGGGGTTTTCTTT 47565 29 100.0 32 ............................. TCCTTATGGTGGGGTTATTGCGCTTCGCCGCC 47626 29 100.0 32 ............................. CTACGTACAATCAATTTACCGGGTTGCCTATA 47687 29 100.0 32 ............................. TATTCCCTTCGGCCTTGGTGATGATGAGCCTA 47748 29 100.0 32 ............................. CCCAAATCCCGTAATGCAATCTCAATATCATT 47809 29 100.0 32 ............................. GTAATCAGTATTTTTTACAGAGCATCGAGATC 47870 29 100.0 32 ............................. GATTATAACAGCCTAATGACAGGATCGCGGTA 47931 29 100.0 32 ............................. GCATATTCTTTTATGCAGATAAATATTGTCAT 47992 29 100.0 32 ............................. GTTGGCCGGGTTCTACAATGGCCGGTAGCTCC 48053 29 100.0 32 ............................. AATTCATACATTTGGACAGGCATCGACAGAGA 48114 29 100.0 32 ............................. GCTTTATCGTCGGGAAGATCGGATTCAGGCAG 48175 29 100.0 32 ............................. AGATTATAATTCATCCATTAAAGAATTATATA 48236 29 100.0 32 ............................. GGGATAATGCGCGTGATTTTCCTCCAGCGGGA 48297 29 100.0 32 ............................. CGTGGGCACCTCCATTTACATGGGGACCGTGG 48358 29 100.0 32 ............................. CTAATGGAGCGGGATCAACACCCCATTAGCTT 48419 29 100.0 32 ............................. TATTTGCGGTCACCAACAGCACCAAATCGGCG 48480 29 100.0 32 ............................. CCAGTCTCATGATGGAAGCTGAATCTCTATCA 48541 29 100.0 32 ............................. AACTTTAATCCGATCATTTTCATAATGAATAT 48602 29 100.0 32 ............................. CAGTCTCTGACGGGAACACAGGTCGCCTATGA 48663 29 100.0 32 ............................. CCATCAATTGCATTCGCGGCGTTGGCATTAAC 48724 29 100.0 32 ............................. ACGACCTGTTTCATTTAGGTTCTTTTGGTAAA 48785 29 100.0 32 ............................. GCCATGGCTGGTATCGTTTAGGTGATATGTAC 48846 29 100.0 32 ............................. GGTACGCCTTATTTGTTATTTTCTTTCACAAA 48907 29 100.0 32 ............................. ATCTACGCGCCGATCCATCAATGGGGCGGCCT 48968 29 100.0 32 ............................. CCGTCACTTTTGGTATTGATGGTCATTATGTA 49029 29 100.0 32 ............................. CATATTACTCTGAACTTGGAACCGTGGAGCAA 49090 29 100.0 32 ............................. TTATTATTTAAATTTGAAACAGTATCGTTAGT 49151 29 100.0 32 ............................. GGGGTCTGTGCTGATCCCAGTCATAATACGGC 49212 29 100.0 32 ............................. ACCCTAAGCACAACCGTGAACAGTCTGGAAAA 49273 29 100.0 32 ............................. ATAAGTTGGCAGAGCAGGCCAGACAGCTTGCC 49334 29 100.0 32 ............................. TTATTCACTTCGGGGGTCAGTTCCTGCGGGGT 49395 29 100.0 32 ............................. GGATCTTGTCCGTGAGGCTTTATTTCGTTTTC 49456 29 100.0 32 ............................. TAGGCAGCATAGTGATTGCGTCCGGCCATCTC 49517 29 100.0 32 ............................. TGAAAACTACGAGTTAAAGTTCAAGATAGCTA 49578 29 100.0 32 ............................. TGGTTATCTGGAGGTTTTCCGCAATGATTGCC 49639 29 100.0 32 ............................. CACTAGAAATTATTCGCGCTGAAATGCCTGAT 49700 29 100.0 32 ............................. TAGGTGCTATTATTTTTATATCAAATAGTGAG 49761 29 100.0 32 ............................. TGTCGCTTTTGTGATACCAGCACGTTCATACA 49822 29 100.0 32 ............................. CAATAACAGCCATCAGGCGCGTAGTCATAGCG 49883 29 96.6 32 A............................ ATGCCCGTCATCACCTGCTGAATTTTGTTCGC 49944 29 100.0 32 ............................. ATGCCCGTCATCACCTGCTGAATTTTGTTCGC 50005 29 96.6 32 ............................A GCCTGCTTTATGGGCGTACTGTGTCCGCGTCG 50066 29 100.0 32 ............................. GTACCCTATGTTGGTGCCTGCATGGATAGGGC 50127 29 100.0 32 ............................. CGCTCGCCGGTGGCCACATCCTCAATGTCCAT 50188 29 96.6 32 .................G........... TACAGCAAGGAAGATGGTGCTTATTAAATTAG 50249 29 96.6 32 .................G........... CCCTTTTATCGCCTGTATGCAATCGAGTGCAA 50310 29 96.6 32 .................G........... GAAAACTAAGTTGCAGCGAGACATACAGCAAT 50371 29 96.6 32 .................G........... CCCGCTTTTACTTACGAGTACAACAATCCCCA 50432 29 96.6 32 .................G........... GCAGACCAGTATCTTTCTAATGATGTTGAGAT 50493 29 96.6 32 .................G........... GGAACGCATGAGCCGCTATGATGAATGGCTGG 50554 29 96.6 32 .................G........... CTGAGGTGGTCATGGCAGCGTTGACCGATCGA 50615 29 96.6 32 .................G........... ATTTACGATGTCCTCCATGAAGAATGGATGGA 50676 29 96.6 32 .................G........... GACTACAACATCATCCAGAAAAAAGACCGGGC 50737 29 96.6 32 .................G........... GCCATGCTAGTAGAACTGTCAAAAGACATCCC 50798 29 96.6 32 .................G........... GTACATCACGTACCCACATCAATCAATACATG 50859 29 96.6 32 .................G........... GGATATTAAACGCATTAAGGATGCCACAAAAT 50920 29 96.6 32 .................G........... TAATCCATTGTCGCTTTTATTTGCTTTTTCAT 50981 29 96.6 32 .................G........... CTGCTGGTCTGAAATTTACGCGATTCGACCAG 51042 29 93.1 0 .............A...G........... | ========== ====== ====== ====== ============================= ================================= ================== 78 29 99.2 32 GTGTTCCCCGTGAGTACAGGGATAAACCG # Left flank : CCCCAACGAGGTCAGCAACATCTTGTAAAGCTGGGCGTTTTTTCTTCATTTTCAATGTAATGCAATCAGTTATTGATAGGTACAGAGGAATAACTCGCGGTTTTAACATATTTATACATCATTACAACACGCTTTCTAGTGAAAAATGCCAATATACTCGCATCTTATTTATCAGCAATTGCTGAAACTGTGATGACTTACACGTGCTTGAGTGAATATTCCAACATGTTGGTGGATATCCCCGCTACTCAATGCAATAGTTTTCAGACTCTTACTCTCTTTGTTGTTGAGTTAAGACCAACAGGTTCTTTTGCGATTTCAGCAATGGGAATCTCATAAATTGATAAGTAAGAGTTAAAAATATGGATGAAATGTGATCTGAATTACAGATGATAAATCGGAAGAATGAAAGAGAAAATTTGACTGACTTTATAGACTAAAAAAATGGTAGAATTTTTCCGCTCTAAAAAATTTTTATAAAACAGATGGATAAAATTAGT # Right flank : GTAATCCCTTGCCCTGCGGTAGATACCGACGACGTGTTCCCCGTAAATCAGGAAATTCTTATTATGAAATAATAACCTTAGTTAGCTCGGTTACTTTGTCGATAATGTCTTGAGGTGCTTTCTCAATAAATTTAACTTGACGATCTGAAAAGTCTAAGGATTTGACCTGATGGATAAGAATTGCACCTTGGGTCGATAATTCTTCGGGTAAGACAACTTCTAACATCATTCCCCTTACGGTACTGGTAATGGGGACCACAACAGCAAATCCGGTATGCTCGTTAAATATCTTTCGAGAGATCACAAACGCAGGGCGGCGTTTCATAATTTTTTTCCCTGCGCTCGGATCAAAATCCAATGAAACAATGTCTCCTTTGTCTGGTATGTACATCAAATCACTTCCTTACCAACAGAGTTAGCATTGATTCATTCTCTATCCTCATCTGTTACCGTGAAACATTCTTTAGGGCTTCCGGCTAACAGTAATTCCAATGTTAACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62449-62722 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBT01000001.1 Xenorhabdus ehlersii strain DSM 16337 Xehl_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 62449 30 100.0 31 .............................. TGATCAGCATCATCCCCATATTTTGCAATGG 62510 30 100.0 31 .............................. AATTTTTCCCGCTGGACGGCGGTAAAGGACT 62571 30 100.0 31 .............................. GCGTGTTCTGACCAATGCATGTCAGTCATGA 62632 30 100.0 31 .............................. ATTTACGGGCGCTGGCATTGGCTCCGAATGC 62693 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 99.3 31 TGTGTTCCCCGTACTCACGGGGGTGTTCCG # Left flank : TCCCTTAATTGAAGAAGTACTTGCGGCGGGCGAAATTTCCCCGCCACCCCCTCCTGCTGATGCACAACCTCCCGCCATTCCTGAACCGGTATCTATCGGTGACATTGGGCACAGGAGCCAGTAAAGATGAGTATGACGGTGGTCGTAACAGAAGCCGTTCCTCCTCGATTACGGGGACGTCTGGCTATTTGGTTACTGGAAATACGGGCAGGGGTTTATGTAGGTAATATCTCGCATAAAATCAGGGAGATGATTTGGCAACAAATCACGGAACTGACTGAGGATGGAAATGCCGTTATGGCATGGCAGACCAACACCGAATCTGGGTTTGATTTTCAAACCTTTGGTGAAAACCGAAGGGAACCGCTAGATTTTGATGGCCTGCGTTTAGTGAAATTTAAACCACTTTCTGAGGATCAGTTTGGGAAAGTTAAAGGCGATTAAAATGGTAAAGTTTTTTCTGTTGATAAAAGTTTTTTAGCACAATTGGTTATATTTAG # Right flank : GTTTTATAACGTGACCGGTGACCAGCAAGGATTGTGTTCCCCGTAAGCTCAATGAATAATTCCAATATGCCCCGCATAAAAAACATTAATATAACTATTGATTAAATAAGGTAATAGCAAACCAAAGATAAGATTATTCATTGTCGTTTAACAATGACTTATTGTGATAAGTCATATAAATAATAAATAAAATTAAAACATTTATAGACTATCCTCTTATTTTAAGTAACCGAAATAAAAATCAATATAAGAAATAATTTCAATATCAATTTATTATTTTTACTAACATCTTGGAGAGATAAAACTCGTTCTATTTGATGATAAAACAAACGAATATTCCAAATTGTGCAATATTACACCTACAAGCATAATTCGTTGATGATTGTCAAAAAGAGCTATGATAATCTACGCGCCTTTCCGTCTTAATTCGTTCATTTTATAGACAACCAAATATCAAAAATAGGAAGTGAATTCATTTATGAACTTAACTAACACTAGCA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTTCCCCGTACTCACGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.80,-10.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 31190-24560 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBT01000012.1 Xenorhabdus ehlersii strain DSM 16337 Xehl_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31189 29 100.0 33 ............................. CCGCATATCTGATTACTAATAACTCAACACCCC 31127 29 100.0 32 ............................. CCACCACGCCATTGTTAACCGTTTATTGTGGA 31066 29 100.0 32 ............................. AAGATAAAGATAATAAAGTCGTAAAATTCCAG 31005 29 100.0 32 ............................. CGATTAATTTCGTATTCAGTCATCACACCCTC 30944 29 100.0 32 ............................. GCAAAACTAAACATGCTGGATGCAATGAATAA 30883 29 100.0 32 ............................. AACGTTAATGCGAGTATTGAAATTTGGCGGAA 30822 29 100.0 32 ............................. CTATTATCTCTTTTGCTCTGTGTGGTTTCGCT 30761 29 100.0 32 ............................. ATTCACGGGCTGCCTGTATCGCATACATAGAA 30700 29 100.0 32 ............................. TAGGCGAAAATGTATTGGTATTGGGTTCCAGT 30639 29 100.0 32 ............................. CCGGTGTCTGTACCACGGGCCTGCCGTGGCGG 30578 29 100.0 32 ............................. CATTTAAATACAGGGCAATTGGACACTGATAG 30517 29 100.0 32 ............................. AGATTTTAATCATTATTTGTGCTAACGATATA 30456 29 100.0 32 ............................. TCAGCCCCTTTGTATTTATCAATAACATCATC 30395 29 100.0 32 ............................. AACACTGCGTCAGACATCCAAATTGGATACAG 30334 29 100.0 32 ............................. ACGGTCGAGTCCATGGCGTTACGGGTGTGACA 30273 29 100.0 32 ............................. GCCGTTGTACAGTGAAAATTGTCTCTGTTGAT 30212 29 100.0 32 ............................. GTGTAATCAGGACGCAATCAATATTGCTATCG 30151 29 100.0 33 ............................. GAACGTTATGAATATTAGCGATGCGTGCAACGC 30089 29 100.0 32 ............................. TTATGCGAATTAAAATTTTGTTTGGTGCGTCA 30028 29 100.0 32 ............................. TACAGTTAGCGTAATTCTGACATCCTGACGCA 29967 29 100.0 32 ............................. TTGCTATTAACACCACCCAACAAGAACGCATC 29906 29 100.0 32 ............................. CCCCTTACCGCCAGGTTCTGACTCATGGTTTC 29845 29 100.0 32 ............................. CCTTTCCACGTCTTGTCATCAAACTTAATGAA 29784 29 100.0 32 ............................. ATGCGGACAGTATCATCATGCTGTATCGCGAT 29723 29 100.0 32 ............................. AAAAAGAACTTCCAGTCTAGGTTAGAGAGTCG 29662 29 100.0 32 ............................. TAATAAAAATCACCCTCACTCTCTCAGGCGAA 29601 29 100.0 32 ............................. AAATGATGAAACACACATTCTTGGGCTATGAG 29540 29 100.0 32 ............................. GGTGGCAATAAACGCATCAGTATTTTGTTTTA 29479 29 100.0 32 ............................. ATCCATCGCCACTACGTCCCGAAATATACTGG 29418 29 100.0 32 ............................. TATTACGTCATATCAAAAGATAATGCCGACGT 29357 29 100.0 33 ............................. AGGTTGAAAGTGCTATAAACTTAAAAATTAATG 29295 29 100.0 32 ............................. ATGGGGGAGACGACGGTTATCGCCAATGCTTA 29234 29 100.0 32 ............................. CAAAAAGAAGAACAACGCTTGAACAGAATTGC 29173 29 100.0 32 ............................. CGCAAGAAATGCGAGCAGCGCAGTTGGAAAAC 29112 29 100.0 32 ............................. AATGCAGTCTTATTACATCAGTTGTGGGATGA 29051 29 100.0 32 ............................. CCAACAACAATGGGACAGATCCCAATAGAACC 28990 29 100.0 32 ............................. CGGGGCGTCGGTGGTGCGCATCGCATAGTGGC 28929 29 100.0 32 ............................. TGTCTGTAAATTTTTCAGATAGTTGCGATTTG 28868 29 100.0 32 ............................. GTTTGCTGTTAAAAATCTCATAGAGAAAAACA 28807 29 100.0 32 ............................. CTTTTAAGATAGCCTGCTCTACAAAATCAGCT 28746 29 100.0 32 ............................. ATGGAACTGCTTATTTAATCCAAAGCGAAATA 28685 29 100.0 33 ............................. CGACAGGAGGCCATTGATGCCGTCAAGTCCGGC 28623 29 100.0 32 ............................. CAAACAAAAAAATCAGTTAATGGTACACCAAT 28562 29 100.0 32 ............................. CGCGAGGCCGAGAATGTCAGGTCAGGATACCG 28501 29 100.0 32 ............................. TCACTCTGGGATTTAGTCACGGTCGGCGATGC 28440 29 100.0 32 ............................. GGTTCCAGCAGGCCCTCGCTGATGGGCATATC 28379 29 100.0 32 ............................. GCATTTCGGTAACTGAAAATTAGAAAGAGGCA 28318 29 100.0 32 ............................. GTAATGAATGCCGTTAAATGTACCTAACAGTA 28257 29 100.0 32 ............................. TCTACAATAAACCTGCTCATTTCTTGGAATAT 28196 29 100.0 32 ............................. TAAATTGGCTGTATCACGAATATAAATATTGG 28135 29 100.0 32 ............................. ATAGCTACGAAAGGCGGCTTAGTGATTATGAT 28074 29 100.0 33 ............................. TTGCTATCAACGCCACCCAGCAAGAAAGCATCC 28012 29 100.0 32 ............................. GAAGATGAGATAGCCGAAATCATGTGCGGCGC 27951 29 100.0 33 ............................. GGGTTCCGTGGTGGACACCCAAAACGACACCGC 27889 29 100.0 32 ............................. GGGGCAATTCTCTCCTTTAACTTAACTCCTTG 27828 29 100.0 32 ............................. CCTACGGTATTTTGCTGAGTTACTACGCTCAC 27767 29 96.6 33 ............................A GCAGGGAAAAACGGGCGTTGCCCAAATCAAAGC 27705 29 100.0 32 ............................. GTGGTACGGAAACTGGACTCTTTTCCCTCGCC 27644 29 100.0 32 ............................. CCAACGTTGAGCAGTCACTGGCTCAAGGGGTT 27583 29 100.0 32 ............................. ACTTTGCCTCGTGGGGCGACGGTCTTTTGGAA 27522 29 100.0 32 ............................. CGCACTTGAGAACGGAGTGGCAAATATCAACA 27461 29 100.0 32 ............................. GTCATAATGCTTGTGGGCTATGATTTTGATGA 27400 29 100.0 32 ............................. GTGAAACCGCTGCGGCGGTTATCGGGATTGGC 27339 29 100.0 32 ............................. AAAGCGAATTATTGCCATTCTTCGAATCCATT 27278 29 100.0 32 ............................. ACAACTGCAATAAAAAATTATAGGGCTTTAGG 27217 29 100.0 32 ............................. TCACTAAACATGGCGCTCTTGGGTGAGAAATA 27156 29 100.0 32 ............................. CCCGCGCGCCAGTTTCGCCAGCTCGCCATAAA 27095 29 100.0 32 ............................. CGCGGTGAGTATAAACAGCTTTATAGCCGCGT 27034 29 100.0 32 ............................. ACAGCGACGGAGAGACTACGATGAGTGAGAAA 26973 29 100.0 32 ............................. GTTATAGAAACTAATGGTTCTGGTTTTATTCG 26912 29 100.0 32 ............................. GCTGCAAAAATCGCTGCTGATGGTGCAAAGAA 26851 29 96.6 32 ............................A ATAACCCGTAAATCCGGGACTTTTTAATATTC 26790 29 96.6 32 ............................A ATAACCCGTAAATCCGGGACTTTTTAATATTC 26729 29 100.0 32 ............................. CGCTACCCGGTGCAATCAATGATCCACAAAAA 26668 29 100.0 33 ............................. GAAATATGGAGTTTCATCGACAATACTAATACC 26606 29 100.0 32 ............................. AGCATAGAGTTAGCCGCAGGAAGTGGCTGCTG 26545 29 100.0 32 ............................. ACAGTAACCCTCGCCATTTCAGGCAGAATTTC 26484 29 100.0 32 ............................. CATAATTTTTCATATACAGATTTTCGCCCTGA 26423 29 100.0 32 ............................. TTTTGCAATTGTGATTTACTGATGCCAATATC 26362 29 100.0 33 ............................. CCTGCTCGTAGTTGCGCACGATGCCAACGGAAC 26300 29 100.0 32 ............................. TCAATAACTATTTTCTAAAAATGTAAAATTAT 26239 29 100.0 33 ............................. CTCTTCCCGATGGCTACCGTTGGCAATCTATCC 26177 29 100.0 32 ............................. CTAGCTGTAATTGCAATTCATCATACGTAGGA 26116 29 100.0 32 ............................. CAGATCGATGGCGAGCCGGGGCTGGAAATAGA 26055 29 100.0 32 ............................. AAATAAAATACCCATCAATACAGATTGTGAAA 25994 29 100.0 32 ............................. CGATCAGTATTTTTCTAAAATGGATGTAGTAC 25933 29 100.0 32 ............................. CGAATCCCCGCCTCCGCTTTTCTGCTTGACGT 25872 29 100.0 32 ............................. GTTGACCCTGTCCGGCGGATGTCATGAACAGT 25811 29 100.0 32 ............................. ATAGCGATGGTGACTATGAAACATATGATATT 25750 29 100.0 33 ............................. ATCTTTTTGAACTTCTTTAATGAAATCCAATGC 25688 29 100.0 32 ............................. TTGATAAAAAATCACCAACCGAAAATAAAGAT 25627 29 100.0 32 ............................. CTCGCACATTTATCATGTCAGCCTTAACTAAT 25566 29 100.0 32 ............................. AGACAAATATCTACAGTCCGATAATCATAGAA 25505 29 100.0 32 ............................. AGACAAATATCTACAGTCCGATAATCATAGAA 25444 29 100.0 32 ............................. GAACTGACCGAACGTTATAATGTGCAATATAT 25383 29 100.0 33 ............................. CCGGGGCGCGGCAAGCTGTCTGGCCTGCTCTGC 25321 29 100.0 32 ............................. GACATTGACACTAATTGGCTGATTGAGCATCA 25260 29 96.6 32 ................T............ TTTTTCTACTGCTTCGCAAAGCTTGGCTATAT 25199 29 100.0 32 ............................. GGTTATCCAGTGTTCAAACGTCAACAGGTGCT 25138 29 100.0 32 ............................. ATGGCATCCTGGATTTTTTTGCGCATCGCTAT 25077 29 100.0 32 ............................. CAATAGTAGGAATAAATAACATTGCAAATAAA 25016 29 100.0 32 ............................. AGTCTGTCCTGTCGAGGAAGCGGAATATCACC 24955 29 100.0 32 ............................. CCCGTAAACAACCTTTTCGTTTAGCTTTGCTG 24894 29 96.6 32 ............................T TATCGTTTTGAGGGTAAGCAGAAAATGCTATC 24833 29 100.0 33 ............................. AGGTCTCTATTGACGTGGATGTCGGTCTTCGTC 24771 29 100.0 32 ............................. CAATTTAATCAAACGGGCATGGAGTTTATTTA 24710 29 100.0 32 ............................. CGCTGCAATAATCTCAGAGTTCATTGAACGCC 24649 29 100.0 32 ............................. TGTAGTAACATCAATGCAGGATAGACAATCTA 24588 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 109 29 99.8 32 CTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : AGACGGAGAACAGCGCCGTGATCGCAACGGTAAGATCAAAGGTTGCCGAGTACCGCTCATTCATGAGGAGGAACAGTTGCAGTGGTTATCGCGCAAATTAGCAGGAGCGGCGCTGTTATCGACGGCTTGGGTAACACCGGAGTCCCCAATCTATTTTTACAAAGATGATATTAGGGGAAAAATTCAGCCAATATGTTTTGAAGGGCAAATCATCGTACAGGAAAATGAATCCTTTATTACTCTTTTAAGTCAAGGAATTGGTCCGGCTAAAGCTATGGGTTGTGGTTTACTCTCTTTGGGTTTGAGTTAGAGATGATCCTCGTAGCACAAATTTTTCGTATAGGGAATTTCGGTAGATCGGGATGGTTTAAGTTTTGTCTTTTTTAACATTTTGAAAAACAAATATTTTTATATTTAATAAAATGCGTTTTTTAAGTAAAAAACGTGGTGGAATTATTTATATCAAATAAGCTCTTTAAAAACAAATAGATATAATTAGT # Right flank : CAATAGCGAGAGAGGTTCCCTTCTCTCATTTTACTGCTCCCCATACATACGGAAATAAATATAGTGTTTATCATATCACTTTGTTGCAGATAGAGGTGTTTATAGCCTGTGGAGAACTCAAGTCATGGAGGGCTTTTCAGTGTGATAGGAGCTTATGGTGATATATCAAACATCTTTTCTATTTAATCTTTGCAACTTATTGATAATCTGTATCGCTATAAAAATATCGTTGAGTCGTTGAGGTATAAGGGAATAGCGAGTTTCCAGCATGATGGGAGGGACATGTTATATCCTATTGAAAATAAGACAGATAAAAAATGGTTGAAATCGTCCTATAGTAAACTATTTCCATCCGGTAAAATCCGGAGCAAAATAGGGCACGTTGTTATCATTCATAAAATAGTAATAAAAAATGACATATTGTCATTGTTTCAGCTTTCAATTTGGGCTTACTGCGTTTATGATGCGCGCTTCGTATTTTCAACCGGCGCCACTGGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //