Array 1 1512253-1512825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023691.1 Streptomyces platensis strain ATCC 23948 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1512253 29 100.0 32 ............................. AAAGTGATCCTCACTCACCTGCCTTTCAAGGT 1512314 29 100.0 32 ............................. ATCACGCTCACCATGGACGTGTGGCCTCACGA 1512375 29 82.8 32 C..C.......A.CC.............. GGGCGCTCGTCCACCCCGGAGTCCATGCCCCA 1512436 29 93.1 33 .............CC.............. CATGAGGGAAATGGTGTGTGGGGGTGGGATGCT 1512498 29 93.1 32 C..C......................... GCCCAGCCGGTTTGATTGATGTCCCACCGGTA 1512559 29 96.6 32 .............A............... GGTGGACCGGGGTCACGGTGGCTGGTGACGAG 1512620 29 89.7 32 ....C......T.A............... CGCCGCAACCGCCGGCCGGAGGGCATGACGGA 1512681 29 79.3 32 C..T.......A.CC..........C... TTCTTGATGCGGTTCGCCACCCGGGACAGCGT 1512742 29 82.8 27 C..C.......A.CC.............. CGCCGCCCGGATACGTGGTCTGGCCCC 1512798 28 75.9 0 C..C.-.....A.CC.............G | ========== ====== ====== ====== ============================= ================================= ================== 10 29 89.3 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : GTGGGCCATGACCAGCGCGTTCGTGTCTTTCAGCATGGTCAGGGCCTTCCCTGCTTACCCGGCGGAAGGTCCCCGGAATGTCCCTGGGACAGGCTTGAAAGTCCCCGAAAAGTCCCCGGGATGCCCCCGGCCGGCGAGGGCCTCAAGGGAAGCCATCCACTTATTGCGGTAGGCGGAGCAGCTCCCAGGCAACACCTCCATCAGCCCGGCTGCAGAGGGCCCACCGTCGGCGGGCGCCAAGCCGAATCGGGCATCGCGCCCCCATGGCGCCAGCTCCATCCCGGCAAGAGCCGTCGTGACGGGTCGAGAGAGAGCCCAGTATTAGCCTGGGGACACAGACATCACATGTACGACGCCGGAGCAGTACCCCAGGCCACAATGGCTCCGCGGACCACTGCCGCCCCGCCGGACCCGCAACCCACTCGAAGGCCACTATGTCCGAATCGCTGAAACTAAGTAAAAACAACTCACCGTCTTCCTGAAACCGCAGATCACGACCT # Right flank : GTCGTACCCGATGGACTCCTCAGCAGCCCGAAGAATCTTCCGACCCACCCGCCTCGGCAGCCCTGTTGCTGGATACGCATCGCTACCTCAGCGGCCGCAGCCGCGCCGACGATGATCGACGCTTTGCCACGCTGCGCCGTCATGGTCCATTCGGGAGACCTCCGACGGCGCAATTCGGAGCCACGGGCACTCAAGGCCCACCTCGCGCCGTAGCCAAATCGTCCAACCGAGCCCACATTTGTCGTGGCCGGAAATTCGAGCTACAACATCACCCCCGGCGGGAAGACCCGCCAGGCATGCTCGAAGTGATTGGTGCGGTTTTGGCGACGGTCGTGGACAAGGGAGCCCTGGATCGGTGCTGGCTTCTGGCGCTGAAGGCCGAACCCTGGACAGCACCGAGACGGACGAGATGCGCCTTCTTCACTGTGCGTCACCCCGACGCTCACACAGTCTCACGCACAGACGCCCGCACGACGGGCCCATGAAGGTCAAGTGGCGCT # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : TGGTCCCCGCGCGTGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1515571-1516758 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023691.1 Streptomyces platensis strain ATCC 23948 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1515571 29 100.0 32 ............................. TGGCCTCGGCTCAGGTGGCCGTCGAGGACCCG 1515632 29 100.0 32 ............................. CAGTCGGCGGTGGCCCGCGCACAGCGGGCAGC 1515693 29 100.0 32 ............................. GCTCCACGCCATACCGTTTCCGTAGGCCCGGC 1515754 29 100.0 32 ............................. ATGGCCGCCGCCCGCAAGGCCGCCGCCGACTC 1515815 29 100.0 32 ............................. ACCTGGCGCGATCGGTGCCAGGATTCACAAGT 1515876 29 100.0 32 ............................. GCCGCGGCAGGCGTCGTCGCCTCGTCGTCCTT 1515937 29 100.0 32 ............................. GAGCCCAACCTCGGCAGCTTCCTTCGCGGCTT 1515998 29 100.0 32 ............................. GAACCGGGACCAGTCGGACCACGACCGGCAGT 1516059 29 100.0 32 ............................. CGCCAGTTCGGCGCGGAGCCAGCTGGTAGACA 1516120 29 100.0 32 ............................. GAAACGCCCGGACAGGTACCGCGTGATGGCGG 1516181 29 82.8 32 C..C.......A.CC.............. GCCTTGGCGTCGTCGACGCTGGAGAAGCCGTT 1516242 29 82.8 32 C..C.......A.CC.............. GCCGGGGCGTCGGTGGGCACGTACACGTCCAG 1516303 29 82.8 32 C..C.......A.CC.............. TTCTTCGCGGGATGACGACCGGCCCGCGCTTT 1516364 29 82.8 32 C..C.......A.CC.............. GGAGTCCAGTATGCCTGCCATCCCGTCTGAGC 1516425 29 82.8 32 C..C.......A.CC.............. CCTGTCCTGGTCCAGGACGGTGTCCTGACCGA 1516486 29 82.8 32 C..C.......A.CC.............. GGTGCTCTTCAGTGAGCCCGGTCTCGGCAAGT 1516547 29 82.8 32 C..C.......A.CC.............. CTCCAGCTACAGGACTACTACCTGCGCCGTGG 1516608 29 82.8 32 C..C.......A.CC.............. GGCGTGACGAACGAGCCCTTGCCCTGCCGGGT 1516669 29 82.8 32 C..C.......A.CC.............. CACCCCGACGCCGAGCACTGGATCGCCGACCT 1516730 29 82.8 0 .....................GACC.G.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 91.4 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GAAGCCGCGTCCGGCTCGGTGCAGGTCGGGAACGAGAAGGAGGGTTGGCCGCTGGTTGGAGACGACCTGGTTCAACAGGCGGTCCAGGGGAAGTGGCCCATAGCCCAGCTGACGGCCGAGGTCCCAGGCGAACGTATCCGCGGTCAGCCCATCGGCGGGGATGGTGGCGTGGACCGTCGTGCGGGGGTGGCCAGCGGCAGCTGCTCCCGCCAGAAACCACGCCAACAGAAGGCTTTTGCCGGTGCTTTGACCGCCGCGCACCAGGCGCAACCGCGGCCGGTCTCCGTCCACGTCGACGACCCAGTCGAACAGCTGCTGCCGGCCGGGCACCCCCACATGTACCAGCGGTACGACGCTGGAGCGGTACCCCAGGCCACAATGGCTCCGCGGACCGTTGCCGCCCCGCCGGACCTGCAACCCATTCGAAGGCCATTATGTCCGAATCGCTGAAAGTAAGTAAAAACAACTCATCGTCTCCCTGAAACCGCAGCTCACGACCT # Right flank : CCCTCAGCACTCGCGGGGGTGGTCCCGCGGCGCGGTCGCTGATGGATCATCCAGGACTGCTGCGGGGGTGTTCCCGTAGCAGAGCGCCGCAGCTTCGCACAGGCAGACTGCTCCCCGCACGCGTGGGATGGTGCCGCCTCGCTGCTCACTGTGCGGTCGTCGTCCTTCTACTTCGCGCGGTCGCCACGGAGCGCCAGGGCAAGACCTGAAGCCCCCCTGTCCCAAGAGCCGCGTGGCCTCGAAGCTGTACCTGTATGTCGTGAAAGCCTGAGTTAGTGAAAGTGGTTCAGAACACGGTGCTGGGCGTGTAACGATGCAGGTCACGAAGTCTGCTCCCCGCGCCTGCGGGATGGTTCCCACCAGCAGCCTGACTCCTTCGCAGTCTCCGCCTGCTCCCCGCACCCGCGGGGATGGTCCCGCGCGGCGGGTGCGCGGGACGTAGGTCGGCTCCTGCTCCCTGCAGCCGCAGGGATGGCCCCAGCCGGATTGCGCCCCGATCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : TGCTCCCCGCACCCGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1519696-1520518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023691.1 Streptomyces platensis strain ATCC 23948 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1519696 29 100.0 32 ............................. TGCGGCCACACCTGGGCCGTAACCCGCGACTT 1519757 29 96.6 32 ..................A.......... CGCGACGAACACCCGCGCCCCGGCGGCTCAGG 1519818 29 100.0 32 ............................. ACGGTCGGCATGATTTTCACCAGCACGCTGTA 1519879 29 100.0 32 ............................. CTCCGGAAGCGCCTGAAGGAACTTGAGCCGAA 1519940 29 96.6 32 ....................A........ AGCTTCACGCCGGCCCGGCGATACACCTCGTC 1520001 29 93.1 32 ..T..........C............... ATCATGACCCCGGTCGACGTGCCCTGGTGGGG 1520062 29 93.1 32 ..A.....T.................... TCCTGGCGCCCGGTGACGGGGTCGAACGTGTT 1520123 29 100.0 32 ............................. ACCGCCGACAACAGCGTGTGGGGCGGGTACGT 1520184 29 89.7 32 .................A..AC....... GCGATTAGCTCCATGGGCTTCTTCTGCTCGGG 1520245 29 82.8 32 C..C.......A.CC.............. TGCTTCACCAGCGCTTCCGCAAGACGGCTGTA 1520306 29 100.0 32 ............................. TGGACCCAGGCGCCGGAGGGCAGGTTGTGTCG 1520367 29 96.6 32 ..............A.............. TCGGAGACCGTTCACCGCCGCCGAACCACCGT 1520428 29 96.6 32 .................A........... TGGACTAGTGGCGCGCCCGTGTGTCGCCCGGC 1520489 29 79.3 0 ..A........A.CC.....T....C... | C [1520505] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.6 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CTACGACACAGGCTGCGGGGTCAAGCCGGGGACAGGACCACGGCCGCCCATGCGACCGGCCTGGGTGGATCAATCGGCGGCGCACCGCACGGCGCGCTCGCGTCCTGTTCGGCCTCAGGCACCGTCGGCGACGCCTTTTATGAGCCCGTTACTGCGGTAGGCGGAACAGCTCCCAGGCAACATCTCCATCAGCCCGGCTGCATACATCCTGCCGTCGGCGGGCGGCCAAGCTGAATCGGGCATCGCGCCCCGCCCTGGCGCCGGCTCAAACCCGGCAAGATCCGGCGTGACGGATCGAGAGAGAGTCCAGTATTAGCCTGGGGACACCGACATCACATGCGCCAGCGGTACGACGCCGGAGCGGTGCCTCAGGCCGCAATGGCTCCGTGGATCGCTGCCGCCCCGCTGGACCCGCAACCCAACCGAAGGGCATTATGTCCGAATCGCTGAAAGTAAGTAAAAGCAACTCACCGCCTTCCTGAAACCGCAGCTCGCGGCCT # Right flank : CACCGTGCTCCGCAAGATGAACCAGGACTCCGGCTGCTCCCCGCACCCGCGGGGGGGAGCACTGCGCCGAGCAAGGCGGGGGCGGCCTTGCCCTGCGTTGCGTTCGCTCATCCCGACGAACGGAAAGGTCACGATGGCCGACGACCAACAGCTCTGGGGCTAAACCGAGGTCGCCTCCCACGTGGGCATCAGCTTCGGCGCTGCCCGCAGCCGGAAGAGCCGGGGCAGCCTGCCCGCGCGCGACGACGACAGCGTGCCGGACCGGCCCCGCTGGAGGCTGGCCACGTTCAGGGGCTCGAAGACGGTCGGCCGAGGTTTCCGCAGCGACTGCACGGCCCCTCCCGTAGGAGCCCGCTCCATCTGGTTGACCGGCACCCGTAACCACGAGGACTGTGGTCATCACGTCCAAACTCCGGTGCCGTCCCTTCTGTTCCACTCGTTACCCCAGGTGGAGGAACCGCAACACCGCGTCGCCGATTGTGGCTACGGTGGGCAAGTCG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1522277-1523095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023691.1 Streptomyces platensis strain ATCC 23948 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1522277 29 100.0 32 ............................. AGCCGTAAGGCGGCGTTGAGCCTCAACGTGGT 1522338 29 96.6 32 ...........G................. AAGTACCAGCTCACCGAGGCGCAGCGTTCCCC 1522399 29 93.1 32 ...........G.........C....... GAGATCGCGCGGCTCGACATGAAGGCCGGCGC 1522460 29 96.6 31 ......T...................... CTGGGGGGTCCTATTGCCGGAACTTCATCGC 1522520 28 89.7 32 .............GT.......-...... ATGGGCGTGGGGCCGAAGAAGTACGGGCGAAG 1522580 29 93.1 32 ..............T...A.......... GTCGTCAGTTGCCACGGAGCCGACTGGCCCTC 1522641 29 100.0 32 ............................. AAGGACGACATCGTCAAGCTGACCCGGCTGGG 1522702 29 93.1 32 ........................TC... AGCATCGGAGCGGTTGGGCTGCTCCAGGTCAA 1522763 29 89.7 32 .C..........T...........T.... TGCACGCCCTGGTCGTCGACCCCGCCCTGCTG 1522824 29 100.0 33 ............................. GTGGCTGCGAGCATGGCGGTCTCCTGGTCTGTG 1522886 29 79.3 32 TG.G.......G.AT.............. GACACCGAACTACGGAAATCGATCACGACGCA 1522947 29 72.4 30 G..G.......G.AT...A........TG CACCCCATCGACCGCCCCTTGGTCCACACC 1523006 29 79.3 32 G..G.......G.AT..........C... CGGAAGTACGGCCGCCAGAGGGCTGGTCAGAG 1523067 29 72.4 0 G..GA.....TG.AT..........C... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 89.7 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : GGCACCCACGACACCTGGGTTCGGCCCCAGGTCCAGCTCGGGAACCATTACATGGCCGACTTCATGATCGCCGGTGAGACTTCCCTAGGGCTTCGCTGGACGCTGGTCGAGCTGGAGAGTCCGGTCAGCCGCCTGACCAACCCCGGCAACAAGCGGGCGACGAAAACCCTGCGCCACGCGGTTGACCAGATCGAGGACTGGCGCAAGTGGCTTTCCAACAACCTGCACTACGCCCGCTCCGCGCGCGGTGCCGATGGACTGGGCCTGCCGGGCATCACGGCCGAGGTTCCCGGCTTGATCATCATGGCTCGCGAGGACGCCGACGACGCGGCTGCCGACATCCGGGAACTCCATGCCCGGCGCTCACACATCCAGGTACGCACCTACGACTGGCTGATGCGTATTAACGAGTCACCCGACCCCCTACGTCGAGACGCCCCCGACCAGCGCCTTCGACTCGCTTGAAATCAGCCGCACATCCACCCCTTCTACGCCATGAG # Right flank : CTGGACGAGCCTCGCCATCGATGCCCCAGCCCACTGCCCCCGCCCCCGGGTTGGTCCCGCGGATCGGGGCCCCGGGGGCACCGCCGACCTCCGCTCCCCGCAACCCGCAGAGTTGGTCCCTGCGAGACGAGGTCGGCTTCGCCTGCTTACTCCTGCTTCCCGCTCCCGCGGGGCGTGCCGCTTCACAACAGTCGTTCTGGTGTTGCACCAGCCCTACCGAAAGGGTGACTTTGTTCCGTCAATCGCGAATCGGCAACACAGAGGGTGCGGTCAATGCTTTCAGACTCAACTAAGAGTCTCGGTTGGAGGGATCGCCAGCCTTCTTGCTGGCTCAGTGCACCGTCAGGAGCGCACAAGTTCACACTCAGGAGAATGATGAAGCACATGAATGGTGAGCGTCCGGTAGGGGCCTTAGCGCCTGTCATCTACGTACTAAGTGTTGTCCCGTGCCAGGTGATGGGCAGTGTCTTGTACCTTCAGGGGAAGTCTCCGCACGAGGT # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1538469-1539471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023691.1 Streptomyces platensis strain ATCC 23948 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1538469 29 86.2 32 AC.T..........G.............. CTCGCCCACCTTGTACAGAGCCTGCTCCGTGC 1538530 29 82.8 32 G..G.......G.AT.............. ACGGCGCCGAGCTTGCACGCCAGGCACCCGCA 1538591 29 96.6 32 .........................C... AGCTCCATGTACGTGTCCGAGGTCAAGACGAT 1538652 29 96.6 32 .........................C... GATCACCTGTTCGAGGGCCAGGCCGCGGTTGT 1538713 29 100.0 32 ............................. GTCTTCGTCGTCGCGGTGCCCGGCGGCGGCAT 1538774 29 100.0 32 ............................. CTGCTGGCCCGCGCGGAGGCCCGGATCGCGGG 1538835 29 96.6 32 .......................A..... GCCTACGCTGGCAAGCTACGCTCGCGCGGCAT 1538896 29 100.0 32 ............................. CTCACCCCAACCACCGCGAACGCCTACGCCAA 1538957 29 100.0 32 ............................. ACGTGGCCTCGGCGACATCGAACAGCGCCATG 1539018 29 93.1 32 ...G....G.................... CGGTGAAGAACCCGTTCGACGCGGTGGCACGG 1539079 29 96.6 32 ........G.................... TGCACCGGAATCTGGAGGATGAACTTGAAGCT 1539140 29 100.0 32 ............................. GAGCAGCAGGCACGTACCCTCCTTGAGCGGCT 1539201 29 93.1 32 ........G..G................. GGCTACCGCTTCTACGCCGACGACTACCGAGT 1539262 29 96.6 29 .........................A... GTCCCTCCAGCTGAGGAGGGTGCTGGATG G [1539279] 1539321 29 86.2 32 AA...G...C................... TGACGTAGGCCAGCCTGCCGATTCGTCGGTTG 1539382 29 100.0 32 ............................. CAGGATCGTGAACGTAAACCGCCATGGTGGCC 1539443 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.4 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : TCGCCACCAGAAGCGCAGACCCTTTGGTCTCGTCTCTGGCGGTGCGCAGCCGCGCGACCTGTGCGAAGGGCGCGTCCTTGCCGAAGAGGTCGAACAGGTGACGGTGACCGTCAAGGTAAGCATTGAGCTTGTCGCACTGCTCAGGAGAGAAGGCCCCAGCCTTGAACACCGCAACCCACTCAGCGGCATCCCGCGGCCGTCCCAGAGCATCCACGACGATGGGCAGCAACAACTGCCGATAAATCGCCGGTTTCTGGGTCGGCAGCTCAACAGCGATGTCCTGGAACCGCTCGGCCTCCAAAAGGAGCCGTCGCACGCCAACTTCTTCGAAGGCGCCAAGCCCCCGATACCCCTCCCCCGCAACACTGTTCGAGGAGCGTGCGGACAACCACACGTCATCCAGCAAATTACACAACTAGGCTTCCCCCCATACATCCACGCCATGAGACGCGAGAAGCATCGTTACACAGCAGCCCCCAGCCCCGTCTCCAAATGCCAAA # Right flank : CTGGCCGCAGAGTGGACCCAGCCGTACCGGCAGCTGCCCACGCCCGCCGCGAGCATCGTCGCCGCCTCCACTGACGACATCATGGCCACAAACGCCACCGAGACCCGCCCGGCGCCCCCTGGTCGGACTCCAAACCGCAGGCATCTCCCTCTGGCCAGCCCGACGATCCAGACGAAACTGCCAGCTTCTCCCACACGTACATGTGCTGTCGGCTCTCCCCGTGACGGGCTCCCCGGTCCCCCCGTCCCACTGCCCGGAATCGGGCTCACGGAGCACGTTTCGACGGTCGTGTGGACCGAGCGATCGGGATATGTGCTGGCTGGTCGCTGAATCTGAAGTCGGCCGCCCTGCACTGCCTCGGCCGGGGTGCATGACGGTGCTCGACGAGCCAGCTGGACGACGGCAGGCGCAGGAGTGCGCCATCATGCATGAAGGTGGAGTAACGGCCAGCGTATGGCCGCCAACGGCGCCAAGGGTTCATCGACCATGGCGAGTGCGGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //