Array 1 145943-146702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAJ010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS26 YZU2200_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145943 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146004 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146065 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146126 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146187 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146248 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146309 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146370 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146431 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146492 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146553 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146614 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146675 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163343-164837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAJ010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS26 YZU2200_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163343 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163404 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163466 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163527 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163588 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163649 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163710 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163771 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 163832 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 163893 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 163954 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 164015 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 164076 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164137 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164198 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164259 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164320 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164381 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164442 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164503 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164564 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164625 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 164686 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 164747 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 164808 29 93.1 0 A...........T................ | A [164834] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //