Array 1 22298-21482 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXI01000014.1 Pilibacter termitis strain ATCC BAA-1030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 22297 36 100.0 34 .................................... GGTAACTGGCAATAACGTTTGAGTTTTCTCTTTC 22227 36 100.0 34 .................................... CCCTGTAGGTGTTTCGTTAAGCGTAGTTGGTTAC 22157 36 100.0 34 .................................... GTATGCATGACTTTACAGACGTTTGACAACCCTT 22087 36 100.0 35 .................................... ATTTACGCCTTTTATTTCAGCTACTTCTTTACATA 22016 36 100.0 35 .................................... TTTATCACTTCATATACAGTTGCGTTTTTCTTTAT 21945 36 100.0 35 .................................... TAGCTTTCTTTTCAACGTCAATATGCTTGCGTTGA 21874 36 100.0 34 .................................... CTTAATCATTATAATGTACCATTGCTATATATAT 21804 36 100.0 37 .................................... AGTCTGAAATTACTTCTTGAGTCATTTCGTCATCACC 21731 36 100.0 36 .................................... AACTCATAATCATTCACCACCGAGCCAATTCACTGG 21659 36 100.0 34 .................................... AAGTTGACCTCAACGTACATCTCGTACTTTTCCA 21589 36 94.4 36 ...C...........C.................... GCTTTTGGTTTATAACGGTTAATGACATTTCCTTCC 21517 36 88.9 0 ...C..........................AA...A | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 98.6 35 GTTAAGAACCCTTAAACCCCGAGAGGGGACGGAAAC # Left flank : GTTAAAGCGATCGTTTGAGGAAAAAGATGTGGAGTTGTTTCATACGATTGGGGAGGGCAAAGATGAGGTTGTTTAATTTAGATGAAAACGAGATTTTCCTTGCCAATAAAAAGCCAACACATTGGTTATTGATTTACGACATTGTAAGTAATAAAAGGCGAGTAAAACTTTCTAAAATTTTAGAGGGTTACGGTGTGCGTGTTCAAAAATCTTGTTTTGAGGGTCGAAGTGACGAGCAGACGTTTCAACGGTTAAAAAGAGAAATGCAGGAATTTTATATGAAACATGAGGGAGACAATATCGTCTTATTTCGTCTGACAACGAAATCCATTGTACGATTTGGCGAAACACAAAATCCAGAAGTCAATGATGGGGTGATGATTTTTTAATTTTTTTTGCAAAAAGTAAGTTACTTCTCTCGTTTTTTATGGTAAAATAAAGAGAGGTTTGGTGGAGGACACAATATATTGTGTGTCATTTTCCACACCCACAAAATGTGG # Right flank : ATGCTATCCCTCAAAAAAGGTGATAGCATTTTATAAAAAACGAAATATTCTGAAAATAAAGTGAATCTTTCTTTTTCAACCCAAAAAAACAACCTCCGCCATTCATCTCCCAAAATGAATGGCGGAAGTTGTTTGTTTTTCTCCTCCGAATTTCCAAAGTTTCGCTGAGCAGATTTTTCTTTTGGTATCGCTCAGACACGTTTGTAATGTTATGCGTTCTTCGTTCCCCTTTAGTATATACTCGCTAAAAATTCGAACGCCTGTTTTTTCTTCGATACCAAGCTCGTTGACAATGGAAATTTTGTCGATGACATAGGTGTAGGCGACTCCTTTGTCATCTGTTACTGTTATTTTATCGTCCAATCTCGCCTCGACAAATGGGTCGAACGCTCCCATGTGATGTCCGATAAAATAGGTGTTTTGATTATCCGTGCCAGAAAAATGGTTGGCTCTCCCCCACGTTGATGCGACAGTGTCTGGCTCATTGTCAATAATTTCTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGAACCCTTAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 125972-126784 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXI01000005.1 Pilibacter termitis strain ATCC BAA-1030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 125972 36 100.0 33 .................................... CTATCTAAGGCTTGCTTAGTGCCTTCATCTAAA 126041 36 100.0 32 .................................... TTTGTAGTACAAATGTCAGGAGTTCCGGGAGT 126109 36 100.0 34 .................................... GGTGTCCATAGTGCTGCCATTAAAGCTACCAATA 126179 36 100.0 37 .................................... ATTTTTTCCTTCAGGGTCAACTGCCCCCACATTTTCC 126252 36 100.0 34 .................................... TATCAACTAACTTTTGTTCGATTTTACCGCTTAC 126322 36 100.0 32 .................................... ACGATACTTTTTCTCATCAAACCCCACATAAA 126390 36 100.0 37 .................................... CAAATCATTTGCTTGTGACGACGGATTATCCTGTAAC 126463 36 100.0 34 .................................... ATGTAGAAGATGGTTTGGAGGATTTGATGAATAC 126533 36 100.0 37 .................................... CGAGTACGGGTCACGATAGTCTTTCATCGTTTGAATC 126606 36 100.0 35 .................................... AAATTCTACAATTCCTGAAAATTTTGACATTTTGA 126677 36 97.2 35 .....................A.............. AATCGCCCTGTGAGCGATACGTTGTTAATCATCTA 126748 36 91.7 0 T.............................AA.... | T [126780] ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 99.1 35 ATTTAGAACCCTTAAACCCCGTGAGGGGACGGAAAC # Left flank : AGCCATAAGTAAACATCACGTAGCCAAGTGATAGGGCAAGGACTTTGGTTTTCATGATTGACAACCCCTCTCTACACTTCATCTTGTGAAGTGTTTGTCTACTCATTTACAAAATTCCTTTTGTATAGGGTACCCATATCTATCGCCTTTTACAAACTTATCTTAGGTCAAATTGCAACGCATTTCATTAAACCTTTCTCCTGAAAAACGGACAAAAAATATAATAAAAAATAGTTTTTCCCTTTTTCGTCAAAATTCTCTCTCGCTCAATCCTTTAGCAAACACTCTTTGTCTATTTCCCAATAATCCAACATTGAAATATAAGAATTTGCACTTTCTTTTGACAATTATTATATGGTTACCTATATGATTAAGAACATTTTTTATTTCTTTTTGCAAAAAAAACTATTTCTCCCACGTTTTTTATGGTAAAATAAGAGTAAGTTCGGTGGAGGATACAATATCTTGTATGTCTTGAATCCACACCCACAAAATGTAGG # Right flank : CCCAAAAAACAACTTTCAAATAAATGGAAGTTGTTTTTTCATATAAAGATACCTACAATAAGTTCCCCTAATAGCTCTTCTACTTTTACCTTTCCATTGATTTGTCTTATAATATGGTTACAAATACTATTCGTCAGGTGGAATATTTATCTTTTTGACCTAACTTTAGCATTAGAAAAGACTTTGAGCGGACTTTAGTTCGCGAATGACCCCGCTTGGACGAAGTGAGAGCGTAGAAAGGAGAAAAAATATGAGTGAAAATCTTGAAATTGAATTTAAAACAATGTTAAGCGAGGAAGAATATTTACACGTTTTGCACTATTTCAATGGAAACGAGACAAATTCTTTTACGCAAGAAAATCATTATTTTGACACGGAAAATTTTGAATTAAAAAATCGAAAAATCGGCTTGCGTGTTCGCACATTGCCTACTTCTGCAGAATTGACAATCAAAATTCCGCAAACAATTGGGAAATTGGAAATCAATGCACCGTTAAGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGAACCCTTAAACCCCGTGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1594-1148 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXI01000031.1 Pilibacter termitis strain ATCC BAA-1030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 1593 23 95.7 48 ..A.................... ATTTCACGATTTTCTCTGGAAGAATTGTTATTAACGTTCAGAACACTT 1522 23 100.0 48 ....................... CTTGCCAAACATTTCGTACGCTTTTTGATAATTGTGTTCAAAACCCTT 1451 23 91.3 46 ..A.....G.............. TTCTTAGATTGTTTATCTATTCTTGTACCATTAGTTCAGAACACTT 1382 23 100.0 48 ....................... CAATTGTTATGAATGAAACTTGCTTTCATGTTTCCGTTCAGAACCCTT 1311 23 82.6 47 ..A.....T..A....T...... TTATACCCTTGAATGATATAATCGTTTACGGCATGTTCAGAATCCTT 1241 23 95.7 48 ........T.............. ATCGTCTTGTTTGTGATTATCAATTGTTTCATCATGTTCAGAACCCTT 1170 23 87.0 0 ..A..............A....A | ========== ====== ====== ====== ======================= ================================================ ================== 7 23 93.2 48 AATCCCCGAGAGGGGACGGAAAC # Left flank : TTTTTCGCCTTGCCAATTCATCAATCGCCATAAATCCAATATTATGACGGGTTTTTTCATACTTACTGCCCGGATTTCCCAAGCCCACAATCATTTTTGTCATCTTTCTTCTATTTCCTCCATGCCTGTTCAAACGCAAAAAATGCGAGCAGGCAAACTACTCGTGTGTTTGTTTCTATATAGATACGCATATTATACCACAATATTTGTTTTTTTATTGATTTTAACTTGCTTGGGGTAGCATTATTTCTCGCTATGAGTAATGTAACTATCTTTTTTATGGAAATTCTAAAAAAACTCCGTTTATGACAAAATTAACTGTTTTTCTTGTTTTCGAGCAAATCGACGAAGAAAATTGCAATTTGGGAGAAGTGTGATTTTTAGAGAAGTTTTAAGTTACTTCTCTCGTTTTTTGTGGTAAAATAAAAACAGGTTCAGCGGTGGACACAATATATTGTGTGTCATTTTCCACCCCCACAAAATGTGGGTTCAGAACCCTT # Right flank : TGTATATATAAGTTATGCGAAATACAACCCTAAAATTTTTCAAAAAATTATGCCAAGCGGCTTCGCCGCTAGTTGACAAAATAAAAAATATGTGATATAGACATTTTATGGAGGAATAATATGAATAAACCAAAAACTAATGGAGGAAAGGATATGGACACAAAGGTAATTTTCACTTTTTTGAAGGATTTGGAGGCAAATAATTCTTTGGATTGGATGAAAGCTAATAAAAAGGTTTATGAAAATGCAAAGGCTGAATATGAAATCTTAATTCAGGAATTGATAAACGGCATCAGTTCATTTGATAATTCAGTTAAAAATTTAATCCCCAAAGATTTGATATGGAGATTAAACCGTGATACACGGTTTAGTAATGATAAATCTCCATATAATCCTTCATTCAGGGCGCATATTTCAATTGCAGGAAGGAATCCAATACCTGCTGGATATTATTTAAATATAAAACCCGGAAAAATATTTTTGGGTGGTGGTTTATTTGT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //