Array 1 170094-166287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVKG010000007.1 Shewanella chilikensis strain SaN7-13 SaN7-13_ctg007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170093 28 100.0 32 ............................ GATAAGCTGTGATATCGGCATCAAGGGATAAG 170033 28 100.0 32 ............................ TTTCAGGCACACTCCAATTGCCACTGACAGAT 169973 28 100.0 32 ............................ TGAACCAGCCCCGTTATCAGGTTTTCCATTTA 169913 28 100.0 32 ............................ AAAAATCAAAAAAATTAGATGTTGAATTCCAT 169853 28 100.0 32 ............................ TCTTAATGGGGATGGCTAATATATCGCGGCAG 169793 28 100.0 32 ............................ AGGATCGCCGCGTGGCCATGGTGGTTACTCCT 169733 28 100.0 32 ............................ TCAGTGATTCTATTGGCGAAGAAGCACTGGTC 169673 28 100.0 32 ............................ ATCAGCGTGGCAATGGTCAGCGTTACCCCAGG 169613 28 100.0 32 ............................ GGAATGTCAAGTAATGGACGTAGAGTTGTTTA 169553 28 100.0 32 ............................ ATTGCCAGTGCTGAAATACCATCAGCGTGGCA 169493 28 100.0 32 ............................ ACTTCCGTTACAGACCGTGCATGTATCCTGAG 169433 28 100.0 32 ............................ GGCACCGAACAATCACACTTTGATGAATTCAG 169373 28 100.0 32 ............................ CTTTTGGACGCCCGGCACCCTTTCTTGCTCCA 169313 28 100.0 32 ............................ CTAATAACCCCTATCATTTTTTACCGACCCAA 169253 28 100.0 32 ............................ ATGTGCGCGAATTAAACCATGTACCGAGTTCA 169193 28 100.0 32 ............................ GTGTCACTCCGAAACTTCCGGAAAATGTGCGG 169133 28 100.0 32 ............................ GTCAGAGCTACGAGAACTACAGCCATAAGTCC 169073 28 100.0 32 ............................ ATTGGGGCCAGGATGGTCACGCTTTTTCTATG 169013 28 100.0 32 ............................ ATGTGGTAGGGGTTTGCGGCAGAACAGATGTA 168953 28 100.0 32 ............................ GATTGGTTTTTCCAGTCGTTGTTTCCCGCCAA 168893 28 100.0 32 ............................ GTTACCCGCTTATCAAGGCCATGGTACAGCTT 168833 28 100.0 32 ............................ ACCCTGCGTTTTAGAGCCGAATTCAGCTTTAA 168773 28 100.0 32 ............................ TTTACGCGCCGTGGGCATGTGTTAATTGGCCA 168713 28 96.4 32 ............T............... CCAGCAAGCCAGTTAGTACAAGCCGTCAGGTC 168653 28 100.0 32 ............................ GTACTCAACAACATAATGGCGGCCCGCAAGGC 168593 28 100.0 32 ............................ AATCGGTCAATCCACGGCGGGCAACTTGTTGT 168533 28 100.0 31 ............................ TGGCCGCAATGGGTGCAAGTGCCTCGGTTTT 168474 28 100.0 32 ............................ ACACTGGTGAACAAGATAAAAAATCACAGCTA 168414 28 96.4 32 ............T............... TCCCCAATAACGCCGTTGGCTACTTTGAACTC 168354 28 96.4 32 ............T............... TCCCCAATCCTCATGCAACTGAGTATTGAGAA 168294 28 96.4 32 ............T............... ATTCCAAAAGTGTTGATTTCGGCGGCTGCTTG 168234 28 96.4 32 ............T............... AGCATCCTCAGCAAAACGCCAAATCATTTCAG 168174 28 96.4 32 ............T............... GAGCGCAAGGCGCTTAATGCAATCGTTAAGTA 168114 28 96.4 32 ............T............... TTGGCATTTCGGCGCATGTTCTCGTCAAGATC 168054 28 96.4 32 ............T............... TCATGGACAAATCCCTCATTTCTGGTAGGAAC 167994 28 96.4 32 ............T............... CCAAAGAAATTGAGCCAGTGATGCAGTCTGTA 167934 28 96.4 32 ............T............... CAACACCGGATAACGTAGTCAGCGCCTTACTG 167874 28 96.4 32 ............T............... GTGTTTAGTGATCGCCCCTCTGAGATAGACCT 167814 28 96.4 32 ............T............... CAGCTCCAATTAAAGTTAATGTCATCATCAAC 167754 28 96.4 32 ............T............... TCAGTCGATTTTCCGTCATACGGCGACTGGCC 167694 28 96.4 32 ............T............... CAGCTCATGTCAGCTGAATTTATCCAGCTCCA 167634 28 96.4 32 ............T............... ACCAGCGGCGGACTCTTGCTCGTGCGCTTCCT 167574 28 96.4 32 ............T............... TGCTAAGTACCGCTTGGGCGCTTGATGAACGA 167514 28 96.4 32 ............T............... TGCCTGAAAGCGATGCCCGAGCTGCGATAAAC 167454 28 96.4 32 ............T............... TTCACTTGTAGCACCATCCCCACCATCAAAAA 167394 28 96.4 32 ............T............... AGCCTGAAGGCGTTTGGCATCGACCCCATGAA 167334 28 96.4 32 ............T............... TGCCCTGGTGCTATCGCCAGAGCCGTTCAACA 167274 28 96.4 32 ............T............... ACTTCCGGAAGGGCGTCAATCATGCTGCGCCC 167214 28 96.4 32 ............T............... TTTCTTGTCACCTTCTACTGGTACTCGGTGTT 167154 28 96.4 32 ............T............... CTCGGAAATGAAGCCGATAGCGTTGAGCTTTT 167094 28 96.4 32 ............T............... TCTGTATCATCGGCATGGAGCGACCAGCCATA 167034 28 96.4 32 ............T............... TGCCATTGCACCTACAACCGCTGAATTAACAA 166974 28 100.0 32 ............................ TCAATTATAACTTTTAACCGTGGATATAATCA 166914 28 100.0 32 ............................ AGGTATTTGCCAAGGTCAAAAGCGAGTGGAAG 166854 28 100.0 32 ............................ AGCTTACCGAGGGGAGTACCATCTATCAGCGC 166794 28 96.4 32 .............T.............. ACACCAAGGAACCAGCGGACCCCTAACATCCC 166734 28 100.0 32 ............................ TTTTCACGGGACACCCACGGAAGGGTGATCTT 166674 28 100.0 32 ............................ AAAGCGCATGGGTAAAGGTGTGGACATCGAAT 166614 28 100.0 32 ............................ AAACAGCAGGGCGTCGTTATCGAGGGGAAAGC 166554 28 100.0 32 ............................ TTATCTAGTGGTGTGTTTTCATCTTCGTCGCG 166494 28 100.0 32 ............................ ACAGTTGTCTGGGCAGACGTTATTAGAGCAGA 166434 28 100.0 32 ............................ AATAAAGGCCATTAGCGCAGGGATGCCGATTA 166374 28 100.0 32 ............................ GTCCTTTCTTACAGGGGGTAACTCCACGGTCG 166314 28 89.3 0 ........T.A.....A........... | ========== ====== ====== ====== ============================ ================================ ================== 64 28 98.4 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGTTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GGTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTGCGGGGATTTATCTACAACCTCAGCAATATCTGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCCACTCGCAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGTGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCTCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //