Array 1 30-791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZL01000011.1 Bifidobacterium ruminantium strain LMG 21811 Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 ............................. TCGTTGCCCGCAGCGTACAGGCTCACTATTGC 91 29 100.0 32 ............................. ACCGGATTGACCGTGACCGCGAAGGTCACCAA 152 29 100.0 32 ............................. GGATACAGAAAAGGAGTTGACATGCTGACCAG 213 29 96.6 32 ............................T TGCTTACTGCTCATGTCCTGCGCATTCAATGC 274 29 100.0 32 ............................. TGCTCCGGCGTGAAATCGTCAATGACCTTATG 335 29 100.0 32 ............................. GGTGCGGTGAACTGGCTGAAGGATGCGGGCGG 396 29 100.0 32 ............................. GGCACGCTTTACTATGACCAGGTGTTGAACGA 457 29 96.6 32 ............................T GTGAGGTATTCCGTATTACGTAGAGCTCACAA 518 29 100.0 32 ............................. TGATAATCCAACATCAGAATTCCACCTCACTG 579 29 100.0 32 ............................. TTCGTGGACATCGAATTTTGGGATGATTGGCG C [588] 641 29 100.0 32 ............................. GAAAGTCCGATGCGGGAAGAATCAATCAGGCG 702 29 100.0 32 ............................. GATCGCACGTATTGGGTTTCGCGGCTGCTGTA 763 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : GAGATTGACAATCTCAATGCGTCTGGCAAG # Right flank : CGGGTGGCATGTGCACTACCACGCTTATAAAACGTTCTGTCCGCTCGCATAGTCTGTGCAGCCGATTCATGAATTCGAATCCGACGGCATGCTCTTGCGTTCGTGTGATTCGGACTGTGGTTTAGGCCGATTGCTTTCTTCTTCTGCCTTTCAGTTTTCTTTGATGATAACGACAGTTTCGAAACGAGTCTTTTCGGTTGACGATTTACCGCTGTGTCGTTCAGCAGGGGGTAGCATGGTTCGTATTGGTGGGAAAGCTAGGAGGATGGAACAATGAAGTTCAGTGAAAAGGGGACTGATACTGGGAGCTTTACAAAAGCCTGACTTGCATGGAGATGTTCTAATGGATGACGTTTTATCGGACCTGGTCGATTTCGGAAATGCGATTACGGAATGCGGCGTAGCGGATTCGTCTGCCGGTCTGCATGCTTTTCTGATGGCTTCCATCCCGAGAAACCGTCTTCCGCTGGTTTTCTGGCCCATTGTTGTTGGCGCCCTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 542-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZL01000021.1 Bifidobacterium ruminantium strain LMG 21811 Contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 541 29 96.6 33 ............................A CGCGCGGGGATCACCACAAGCTGCGTCACCTTG 479 29 100.0 32 ............................. GGCAAGCCACTACGATAGCGGGAATCCACAAT 418 29 100.0 32 ............................. GTAGGTTATGATTGCGACGAAGATGCTTGATA 357 29 100.0 34 ............................. GGTATCTCCTCCTGACCGTCGGCGGTCTCTCGGA 294 29 100.0 33 ............................. AGGCAAAAKCAGACGAAACCAAGTAGACGTTCT 232 29 100.0 33 ............................. CGACKKAACTAGGCGGCGGTGGGATAACCGGGG 170 29 100.0 32 ............................. TCGACTTGAGCCAAGTAGTAGGGCGGAATTCG 109 29 100.0 32 ............................. GTCTTGCATATGAGGTATTCGGCTTGCGCGCC 48 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 9 29 99.6 33 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : CCCGCCTTTTGGCGTCCATCAGCAGTGAGGATA # Right flank : CCTTCGCGCTTACCGCCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3109-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZL01000004.1 Bifidobacterium ruminantium strain LMG 21811 Contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3108 29 96.6 32 ............................T TGTCAAGTCCCACGGTCATGTCCAGGACTTTG 3047 29 100.0 32 ............................. ACTTTGATTTCTCCTAATAGTTGCTGCCGGAC 2986 29 100.0 32 ............................. AGATGGCGAAACTACTATTAAACTCATTGGTG 2925 29 100.0 32 ............................. CAGTTTGTGCGTTTTTCGCTTTTATCAAAATT 2864 29 100.0 32 ............................. GTTCTGTGTTCGCGCCAACGCGCRAKTACGAG 2803 29 100.0 32 ............................. AGTGTTGCGCCGTCTGTTGCCGCCGTCCAACG 2742 29 100.0 32 ............................. CACGTGGAACATCGCGCAGGAATGTGCCGCCT 2681 29 100.0 32 ............................. TCATTGGTGGGGAAGTTCGGTGCATCGCTCTA 2620 29 100.0 32 ............................. GGAAACGTGGTCGAAGATGATATTATCACCGA 2559 29 100.0 32 ............................. GCATCGCGTGGAGTTAACGCTGCAGCCTACGG 2498 29 100.0 32 ............................. GCGCGTCCAAACAGTCCACCGCTTTTGCCGCC 2437 29 100.0 36 ............................. KGGGAGCCGTACACGCCGGACGGTCCGGTTCCGGNT 2372 29 100.0 32 ............................. CGGATTGACYATGGTCACGAACCTCTTGCAGG 2311 29 100.0 32 ............................. GATGCTGCATCTCATGGACAAGAACCCCGCAT 2250 29 100.0 32 ............................. CAGGTGCGGCGGGTGATTCCCGACCTTTTGAT 2189 29 100.0 33 ............................. TKTGWAGACGGTCATCTGAAGCACATCKMCCAA 2127 29 100.0 32 ............................. ATTCTTTTTACAAGGCGCAATGCGCCGGAACG 2066 29 100.0 32 ............................. GATGTWGAACTAAGTAAATTCGATATAACCTA 2005 29 100.0 32 ............................. TCGCCGCCGTTCTGAATCATCGCAGCGGGAAT 1944 29 100.0 32 ............................. CAGCCGCCCGAGAAGCTGCGCAAGGTCAACGC 1883 29 100.0 32 ............................. TCATGCGTATCGGCGTAAAGCAGATCATTGGA 1822 29 100.0 32 ............................. CCGACGATGAAACGTTCGATAACAGCACGCTA 1761 29 100.0 32 ............................. GGTACGCAACGCGTCTCTACCCTGGAACATCA 1700 29 96.6 32 ............................G TATCAGCCGCGAGGTGTTGAAACGGTTGCTGA 1639 29 100.0 32 ............................. GGTCACGACGCGCGCCGCGTAGAGGATGTCGG 1578 29 100.0 32 ............................. AGTCCATAACGGGCTGAAACATTGTTCCAAGT 1517 29 96.6 32 ............................T CGCATCATGGTCGCGGTGGCGACGAAAACCGC 1456 29 100.0 32 ............................. GATTACACATACGACAACAATTACATGGTTAT 1395 29 100.0 32 ............................. ACGCCTATTTCGCGGTCATAGTATCGGTTTTC 1334 29 100.0 32 ............................. AAGCTCTACAATAGACCGTCGCRGAKGCCTTG 1273 29 100.0 32 ............................. TCGGTTGCAAACCCGACGATGAAACGTTCGAT 1212 29 100.0 32 ............................. AGATATATGACTGGGTACAAGCAAACATGCCC 1151 29 96.6 32 ............................A TCTTGGATGATTCGAGCGCGTACACGGTCACG 1090 29 100.0 32 ............................. AGCAACCCGTTGATTGTGGTGCTGTTAATATA 1029 29 100.0 32 ............................. ATGGTGTTGAGTCCGGCGGCGAGAGTGGGGGA 968 29 100.0 33 ............................. GACCTACGCGCGTCGCAAGCTTATGACCGTCTG 906 29 96.6 32 ............................T GAGTCGGTGACCCTGCCGGATACGCTCACCAC 845 29 100.0 32 ............................. CGGKKGTGGACAATCCCACCGGCAACAACAAT 784 29 100.0 33 ............................. GTGRGGCTCGAAATCACCGGCACCACCGGTGAA 722 29 96.6 32 ............................T TAGCCGTGTATTTCCGTGGTTGGATCCATTCG 661 29 96.6 32 ............................T CGAAACAGTCGATTCTGGCGCCATTGGCTGTC 600 29 100.0 32 ............................. GGTGGGCGGCTATCCGGTCTCATACGGAGAAT 539 29 100.0 32 ............................. AATCAGATGGCGCAATTGAACACGATCGGCAG 478 29 100.0 32 ............................. ACCTGAAAACCCTCAGCAGTAATAATAAAATA 417 29 100.0 32 ............................. CGTAGATGATGAGGTCAAGCCGAAGGAGTCGG 356 29 100.0 32 ............................. GTAGGTTATGATTGCGACGAAGATGCTTGATA 295 29 100.0 32 ............................. TCCCTAGCAATTCCCCAAGCTTGGATAACGGG 234 29 100.0 32 ............................. GAATTTGGAGCCAGATTTGATTGTGAGGACGG 173 29 100.0 32 ............................. CGTAACCTAGAGATAGTTGCATATACAACCAT 112 29 100.0 32 ............................. CGCCTTTTGGCGTCCATCATGTCAGGAGGCAA 51 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ==================================== ================== 51 29 99.5 32 GTGTTCCCCGCATGCGCGGGGATGATCCC # Left flank : ATGTGGGCTTGTGGGATGAACGGATCGGAGAGGTTGCCGCTGGAAAATCCTATGCTGATGACGAATGGGATGAAGGAAAATGGTAGTGGTTGTGTTGACCGCATGCCCGGCCGGTTTGCGAGGCGATCTTACCCGATGGCTGTTGGAGATATCTCCAGGGGTGTTCGTTGGTCATATCGATGCGCGAATTCGTGAAAAGCTTTGGAAGCGCATCGTCGAGCTGTCGAAGGTGGGACGTGCCATTATGGTTTATTCTGCGCGCAATGAACAGCATCTGGCGTTTAAAGTGCATCGGGCGGATTGGACGCCGATGGATTATGAAGGTTTGGAACTCGTCAAACGTCCTAAAGAAATGAAGGAAGCATCATTCTCTGGTACTCCTCGGCGTGGTTGGAGTAATGCCAGCAAATATCGAAAGGCGAAGAAGTACTCAAAGTAAAACTAAATGAAAAAACACTGATACGAAGGCGGATGCCTTGGTATCGTGCTAATTTCTTAGT # Right flank : ACGCGCGGGGATCACCKCKGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //