Array 1 99333-98572 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALYA01000021.1 Neisseria meningitidis NM3001 NM3001.contig.20, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     99332	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA	
     99266	    36	 100.0	    30	....................................	GGTCAGATTATAATAACGTTGAGCGCGTGT	
     99200	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
     99134	    36	 100.0	    30	....................................	ACTCCCTGTTTATCGGTTTTTCAGCTTAAA	
     99068	    36	 100.0	    30	....................................	GTCAAGCATACTAAACGATTAATAGCTTAG	
     99002	    36	 100.0	    30	....................................	ACAAAGCCGCAAATCGTCCGCCGCGTATCA	
     98936	    36	 100.0	    30	....................................	CGACAACAAAGCCGTCTATGACCTGACCGA	
     98870	    36	  97.2	    30	............T.......................	CACCCTGATATTCCGCAACTCGATATACTG	
     98804	    36	  97.2	    30	............T.......................	GTAAAGTCGGCACAAAGTCTTCAGGTTTCA	
     98738	    36	  97.2	    30	............T.......................	CATCGCGCTGAACATACCGGCGCAGCCGCA	
     98672	    36	  97.2	    29	............T.......................	CTTCCGGTATGACATCACGAAGCGGGGCG 	
     98607	    36	  97.2	     0	............T.......................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.6	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGAAAGAAGATGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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