Array 1 41-375 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYV01000097.1 Lactobacillus sp. UMNPBX15 NODE_97_length_400_cov_1.77391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41 29 100.0 33 ............................. GTTTGTGTTATTGTAGCGGTGTTAATCGCTGCC 103 29 100.0 32 ............................. AAAGCGACTGTATGAGGTTATGATCTATCTTA 164 29 100.0 32 ............................. GATGTTCCGCAGAATGGGCAAAAACGAATTTT 225 29 100.0 32 ............................. CAGTATTTGACAGAATGCAAGAACAAGCTGAA 286 29 100.0 32 ............................. GACACTGACACTACGGCTGGCGGTTTTGCAGG 347 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTGATCCTATGACTACGCTTACCGTTCCGACCGTGAAGTTG # Right flank : CAGCCAAGAATTAGCCGGTATTAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2447-1809 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYV01000016.1 Lactobacillus sp. UMNPBX15 NODE_16_length_37656_cov_34.555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2446 29 100.0 32 ............................. GTCAATGCAATTACTTATAAAGAAGTATTTCC 2385 29 96.6 32 ............................C GACCGACATTTCTTTTTTAACGCCTTCAAGTG 2324 29 96.6 32 ............................C TCCTCGTTAGCTCTTTGATCCTTTCGGGATCA 2263 29 100.0 32 ............................. CATTCAAAAATTTATGATGAAGCTAAATTCAA 2202 29 96.6 32 ............................C CAAAACGTCCAAACCAACTTGCAAATGTTTAG 2141 29 96.6 32 ............................C CAAGCTGAACATTTTGTTGATTATAAGTGTCA 2080 29 100.0 32 ............................. AAAAGTGGGCGATTGGCTTACTCGCTATTGAG 2019 29 100.0 32 ............................. CAATCACTGGTGAAACTTATGTCACTGATCAA 1958 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 1897 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 1836 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16923-17197 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYV01000013.1 Lactobacillus sp. UMNPBX15 NODE_13_length_42005_cov_24.0177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16923 28 100.0 34 ............................ TCGCACAGGCTGTTAAGACTTTGCAAACCGATCA 16985 28 100.0 33 ............................ CAAGAAACGTGCCGAGCTTAAGTCCAAACAGGC 17046 28 100.0 34 ............................ TGTAATTGTTGTATCGTCGTGTGTATAACTAGTG 17108 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 17169 28 85.7 0 .......................A.ATA | C [17191] ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.1 34 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGCTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 19925-22213 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYV01000013.1 Lactobacillus sp. UMNPBX15 NODE_13_length_42005_cov_24.0177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19925 29 100.0 32 ............................. ACTTTGTAAATTAATATCTCTATTAAGTCTAG 19986 29 100.0 32 ............................. CCAATTTACGATTGGATCAATAAGAAATGGTA 20047 29 96.6 32 ............................C TATTTTAGGCGCTTATACAGCGCAAAATTATG 20108 29 100.0 32 ............................. ATTATAAGAAGTATTTTTATTAAAATCATCGG 20169 29 100.0 32 ............................. GTCAATGATTTTATTCTCAAAATCAATATCAG 20230 29 100.0 32 ............................. ATAATGGTTTACCAGATACTCTAAAAAGTTCT 20291 29 96.6 32 ............................C TAAGTTTGTCAAATTCACTATTTTTACCAATT 20352 29 96.6 32 ............................C AAAATATTTAGCAGCATGTCCAGAAAATGCTT 20413 29 100.0 32 ............................. AATTTCATTAGCAAGCGGTCTTCCGTTTCTAT 20474 29 100.0 32 ............................. ATTGTTGTGAGTTTGCATGCCATCTGGTACTA 20535 29 100.0 32 ............................. ATCCTTGTTATACTGTTCAATGTAAGTTAAAT 20596 29 100.0 32 ............................. ATATCTACTCGGCTGGAAACAATCCAAACCGG 20657 29 96.6 32 ............................C AATTCTTCCAGTAACCGGCGCAGCAACATAAG 20718 29 100.0 32 ............................. AACTCAATTAATAATGGTTTGTTAACTCCTTA 20779 29 100.0 32 ............................. ACCACTAAATGTTGGTTAGCAAGTGGTGTAAA 20840 29 100.0 32 ............................. CAGAAACAAGGTTCAATAGATGTATACACCTA 20901 29 100.0 32 ............................. GCCGTTCTTTATTGCAGTAAGGATTTAATTTG 20962 29 96.6 32 ............................C CAAATCGTTGACGGCAATTTAAGTGTGATTGG 21023 29 100.0 32 ............................. AAGTTAACTTAACATCACTATCAAAAACATCT 21084 29 100.0 32 ............................. GACGCCCAGTGGAGAGCCCTCAATTTTAGTCG 21145 29 100.0 32 ............................. ACTGCAATCTTGTTGTCTTGATCTTTGTTAGC 21206 29 100.0 33 ............................. GATGTAAGAGTTCTAGTGGCCTACATTGACGAA 21268 29 100.0 32 ............................. ACTCGGCTTATTAAAATCATTCAGATACGTCA 21329 29 100.0 32 ............................. GTGTAAGGAGGTTGTTTACTAATGACTTTGGC 21390 29 100.0 32 ............................. CACGGTTGAAATGGCTAAGCAACTAGCGATGA 21451 29 100.0 32 ............................. GTATGAAGTAGTGCCCTGCAGATATGTAATAG 21512 29 100.0 32 ............................. GAGTAAGGCAGAGAGAGCACAGTACTTAGCCC 21573 29 100.0 32 ............................. CAAATACGCTATTTTTAGAAAATGGTGTGACA 21634 29 96.6 32 ............................C ATGTGTGAGCCACCTTTGCAATAGAACTTACC 21695 29 100.0 33 ............................. AACCATTTTTGTTGTGAAGGGGAATCCCGAACA 21757 29 100.0 32 ............................. AAGTTAACTGGTGGTACTTCATATTTTTGGAA 21818 29 96.6 32 ............................C TAATCCACAGCCTGCTGGTGGTGGTCAAGATT 21879 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 21940 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 22001 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 22062 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 22123 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 22184 29 82.8 0 ...........AC....T......T.A.. | A [22205] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192-892 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYV01000070.1 Lactobacillus sp. UMNPBX15 NODE_70_length_1629_cov_25.2903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192 29 100.0 32 ............................. ACTTGATCGCAATTTATTTTTATATCCGTCTG 253 29 100.0 32 ............................. AATTGCGTTTGGTTCCGCTCCGAACTTACCTT 314 29 100.0 32 ............................. ATAACCACCTAAAGTACCAGTACCTTCAACAC 375 29 100.0 32 ............................. AGATTAAATCCTTATCAGGTCGTTGTATTGGG 436 29 100.0 32 ............................. TTCTTTCATTTAAATACCTCCTGTTTTGCATA 497 29 100.0 32 ............................. TTAATCCTGATTGGGTAGCGGATATTCATCCA 558 29 100.0 32 ............................. ATCCTGCTTGCTTGGGCGCTTAATTCTCTTGA 619 29 100.0 33 ............................. AATATCCGCCTATTCCAAACTGCCAAACATACA 681 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 742 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 803 29 100.0 32 ............................. GGTAGGGGTGGTCATATACTTTATGTGTGAGT 864 29 86.2 0 ....................T..AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATATTTAGGGAGACAAGAAAATTCTGTTGTTGTGTGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATCGTTTTGTGATTGTTGTTATATCAGGATTTGTTTACTG # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGTACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGTGCAAAGAAAACACGGAAAAGATTAATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //