Array 1 197184-197760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOH01000001.1 Methylobacter tundripaludum 31/32 T449DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 197184 29 96.6 32 ...........C................. AAATCGAGCGCGTTGAAAAACTTATCGTGCCA 197245 29 100.0 32 ............................. CCGCCCCAGCAGCGACGGCCGCGTAGTTGATC 197306 29 100.0 32 ............................. TATTGGAAATAGACACCGTTTTAGGTGTCCAT 197367 29 100.0 32 ............................. CACCGACAGCGACCTGGACGCAGAACTCGGCG 197428 29 100.0 32 ............................. TTTTATATCAATGCCGCTGCTACCGTAGATGA 197489 29 100.0 32 ............................. CGGCCCGTGCGGTACGCCTGGTACTGATTGGA 197550 29 100.0 32 ............................. CCGCCGCGTTGGTTGAGAACATCACCCTGGTT 197611 29 100.0 32 ............................. CGCGATTTGGATGTGATTAGGTCGATGATTGG 197672 29 96.6 32 ...........................T. TCGTTCCAGGAAGAGTTCGAGCGCGATATGGC 197733 28 72.4 0 A................-ATA.....TAA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATAGAAGAAGTGCTGGCCGCCGGTGAACTTGAACTGCCCCAACCTGCTGAAGAGAATATCGCTCCGGCCATTCCTAACCCTGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCACCGATTAAGAGGGCGATTAGCGGTTTGGCTGATCGAGATTCGGGCGGGCGTTTATGTCGGCGATTTATCGGCTAAAGTCAGGGAGATGATCTGGGCGCAAATTGTAGACGGTATTGAAGAAGGCAATGCGATTATGACCTGGAGCACCAACACCGAATCAGGTTTTGATTTTGTTACTTTGGGGAAGAATCGTCGTCTGCCGGTCGAGTTTGACGGGCTCAAACTGGTTTCTTTTTATCCGCTTGAAGACCAAAAAGATAACGATGCTCTTTAACAATTTAATGGTAAAAAACGGCTGTTTTTTCGGTGGAAAAATCGGAGTGGTTATTTCGTTTGATTAACAATATGTTATGATCAGC # Right flank : AACTCCATTTCATCCGCATTGATCAGTCGAATCCATGTCCTACGCGCTCTATTTTTCATTGCCGAATAGTTGCGATAGTGCCGCGCGAAATCGGTTTTTTCATCGTCATACAGTCAATCTGGTCGCTACTTTGAGCAGTTTAAAGACGGCAAGGGAAATTTGGTTGTACCTTGTCCGCTTCATATCTTACAATCCCACCGGGTGTGCAGTAAGGTTACTGGGCGTGTAGGTTCCCCACACATTAATAATATTAAAAAATATTTTGGAGGATAGTATGTTTAAAATTCGTTCGCTGGTTACAGCGTTGGCGTTGGCAAGTTCGGTTTCGGTGGCTTCGGCTTGGGAGACTTTACCCACAGAAGCACCGGCACCGGCCGATAATGCTACAACGCCTGCTAAGGTTGAGTTGGGTCAAATGCTCTATCACGACCCGCGCCTGTCTTCTACAGGTACGGTTTCCTGCTCTTCCTGCCATAACACCATGCTGGGCGGTGAAGATA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 474995-475672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOH01000001.1 Methylobacter tundripaludum 31/32 T449DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 474995 36 100.0 37 .................................... CATATTCAGGTTCATTGGCCTGCGGTAATAACAAATA 475068 36 100.0 35 .................................... AGGAGGAGCTCGCACCCTCCGTCTCTTCCCGGAAG 475139 36 100.0 37 .................................... CATATTCAGGTTCATTGGCCTGCGGTAATAACAAATA 475212 36 100.0 35 .................................... AGGAGGAGCTCGCACCCTCCGTCTCTTCCCGGAAG 475283 36 100.0 33 .................................... GAAAAACTAATTCCATTAGGTTTTATACCATCG 475352 36 100.0 36 .................................... CCACGCTCATTGTGGCGAGGGCGTTGCTCTACCTGA 475424 36 100.0 34 .................................... GTAGCATAAGCCGTGGTTCCTTCGGTAAAACATA 475494 36 100.0 35 .................................... CGAATGCGACATCTTGATTCGGCACTGGTGCGGCA 475565 36 100.0 36 .................................... AGTACCACTGGTGAGACATTTGTATTTTTATTTGAA 475637 36 94.4 0 .................C............A..... | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 99.4 35 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : CGCGGCAAGCTGATGAGCCAACGGTTTCACGGTCATCTACTGACAGTCAGCATCGGGGTGTCCATGTATAGCGCCGACTATACCCATTACACCGACATGATCGAAGCCGCCGATCAAGCCATGTATCAAGCAAAAGAAGAAGGCAGGAACCGGATTGTCATGCTGCCCAATGTTGAAACCGGCAACAAATAACCTGATTAGCGAAAAACCTCGGTCGGCACCGCGATACCGGCATGACAGGCCGCTTATTATCCTAAAAACCGCCGTTCAAACTGTTGTTGCGGCGCGACATTGCAAAATCGGACGGTTTTTAATGTTCATTGTTAAATCAACAGCTTGCGAAAAAATCTAGTTAAAGTGCGCCGTATATTGATTTATAAAGGGAATTTTTGTTTTGTTAAGGTTTCAGGCCGTTTTTCAGGCTTGCCGCCGAGTTATTTACTAGGCGCGCCGCAAACAGCCGAAATTTCGCTTGCAAAGCAACAGCCTGCAAAGGTACA # Right flank : CATGCCAAACGAATACCAATCCGGCCGGGAAGCCAAGCCCTTTAGAGGGCGAAGCAAAGCGAATCCATAACCATCCTGCCCAGCCGCGCGCTCACCGCCATCCATGCCGGTTTGAAGCCGCCGAATCGGCTATCTGGCGACATTGCTTGTTGCTTTTAAAAAAAAGCGTTAGTATCCGCGCCAGCCTGTTAATTACCTGCCTTCTTGGTTCTCCGCAAAAACCTTTGTCTTGTTGGCGTCAATGTTTTTTTGCCACATGCACAGAACGTAAGCACATTAATACCGTTCACATTCAATCCTGTTAAGGTGTTTTTTGACTGCACATACCCGTTTAAACCCTGCCAATGCCGTTACCGAAAACCCGGCATTTCGCCTGGCCTGTTTTGAATTTCAACTTTGCCTAACCGAAGCCACCGAACTCCCAGTCTACAAGGGCTCCAGCTTTCACGGCGCATTCGGGCACGCGCTGGCTCGAATCGGCAGCCACTTCCGCGATTATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 489521-489842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOH01000001.1 Methylobacter tundripaludum 31/32 T449DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 489521 36 100.0 35 .................................... TGTAAGAATCAGCCAGATCCCCTTGCAATCTGTGG 489592 36 97.2 36 ................C................... TATCTGGATGCCATAAATAGAACCGCCACAACGATT 489664 36 100.0 36 .................................... TTTGGGCTAAGAGTTACAGCATCAGCACCATAACGG 489736 36 94.4 34 ...............T.C.................. ATGTGCTAACCGATTGGCGTGAAACCGTCCTTGT 489806 36 77.8 0 ....T........A........GT..AA..C...G. | T [489810] ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 93.9 36 GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Left flank : TCTGTTTTGATGTGCATGACGCCAAACGCTTGCGCAAAATATCCAACGAGATGGAAAACTTCGGCGTCCGCGTGCAGCGTAGCGTGTTTGAATGCCATCTTGAAAGCGCGCAGTTGCAGGAGCTTAAACGGCGGCTGGGCGATTTAATGGACGCGGCGGAAGACCAGGTGCGTTATTACAACTTATGCGGCAAAGACAAGCAGCATATCGTCATCGATGGCGCGGGACGGGTCAGCGCCGATCCCGATTATAACCTGCTCTGAGGCTTGAAAAGCGGTTTGCGGCGCGTCGCTGCAAAATCGGACGATTTTTAGGGTTCGCTGTTAAATCAACAGCTTGCGAAATAACCGAGGAAAATCGCGCCGTATGTTGATTGATAAAGGGAACTTTTGTTTTGTTCAGGTAAATTAGCGGTTTTCAGGAGAATTGATGAAAATCCCGCGCACCGCGCCGCAAACAGCCCAAATTCCGCTTGCAAAGCAACAACCTGCAAGGGTACA # Right flank : CGCAAAAAAAACGCCCGGTTAAGGGCGTTTTTTTCATTGCCAAACTTTAGAAGTTTTTCAAAATTCGGTGCTATTCATTTCGACGCTCACCGTTTCAGGTTGATGACGATCCCCGCACCATCTAACGATTTTCGCTTATCCACTTCCGGTTCTTGCGACATCAACACCTGACTATCCAAATATAAAGGCCGCAGCTTTTTTTCCTTTTCCGAAGCAAATATATTTAATGATTCTCCCTGAACGGCCTTGTTTTGTTCAATCGTCAGCCAGGCATTTTCAGAATCCTTAAATGGCATAGAAAGATCCAGCGGTTTTTGAAATTCAGCCTCTTCAGCCGCACTGTTTTTGGCGCGCAGCACTGAAACCGCTTCCTGCTTATTTTTTGTTTTCTGTTTTGGCTTAACGAGGCTTTCTTTGCTCTTGGACTGCACTTTTTTTACTTCATTTCCTGAAGGAAGACCATTATTAACGCCGGGCTTTTCAAACCCTGTTAGCAAAAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGCCCGGACTTTGATAACGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 4407994-4408329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOH01000001.1 Methylobacter tundripaludum 31/32 T449DRAFT_scf7180000000004_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4407994 29 100.0 32 ............................. CGGCAATAGTGGTGGCCAGCCTACAGTTACCG 4408055 29 100.0 32 ............................. CCTTATTGCAGCGCCCGCAAGCCACCGGAGAG 4408116 29 100.0 32 ............................. GAGGTCAGCTCCGGCGGACGCATCATGGTTTG 4408177 29 100.0 32 ............................. CCACGGGTTTTGTCATAGCGTATATTGAGCGA 4408238 29 100.0 32 ............................. CCCAATTTGAGTGCCGATATTACCCACTCGTT 4408299 29 96.6 0 ............................A | AT [4408320] ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCACACCCGTGGGGATGAACCG # Left flank : AGAGCAAAAGATTGGGCTGAATAAGGTTGCCGGATGAATGAGATAAAACTTCGCGAATATGAAAACTTTCATATTGTGTTATGGCTTTTGAAGGATACGTGTTGGTTGATGGAATGGAGGCTTGAAGGCATCTTCATGATCGTGCCGACGATTGCGGCGGCTTTTCACATTACCTGGCTGGGACGAAAAAACACCGCAAACCTGTTTCATAATTTGGCGGTCAGTAGCTGGATATGCGGTAATGCGGTTTGGATGATTGGGGAGTTCTTTTTCAACGACAGCTTTAGGCCTTTTTCTAAAGTGTTTTTCAGCATCGGCGTGGTGTTTCTTGCGGTGTATTATTTTGGGGTGTTGCCGAAAGAAAAACGCGCCCGGCGATGAAAAATGTCATGCTGAACTGCTTTGCGCTCTTTAACAAATTAATGACAAAAAGCGGCTGTTTTTTCGGTGGAAAAACCGGAGTGGTTATTTCGTTTTATTAACAACATGTTATGATTAGT # Right flank : AATTTCAGATTGTTTTAGAGTGTGTCCTGTCAGCGCATCCACTTCAGTTACCAAGTTGGCATGCCATGAATCTAACGGGTTCTTGCTGGATTAAAGCATCCCATTTCTTTTTGAGGTTTTTGGGTGCAGCGGATTAGCTGCATGGCTATTTTGTACCGTTTACGTTGAGAAAATGAAAAGCATCATCGCAATCTCTCCCTTCCCTCAGCTATTTCCACAGCATTTTTACTCGGGCTGTTTGTTCCCGGCATTCGCCACCAACAACCGGTTAACCTGTTCAAGATCATCTTGGCTAAGGCTGCTGGCCGCTTGTTTTAACTTGATGCTGTTGATCAGGTAATCATAACGGGCGCGTGCAAAATCCCGTTTTGCCTTGTACAGATTCCTTTGTTCGTTCAGCACATCGACCATGGTTCGGGTGCCTGCGCCAAAGCCTGCTTCGGTCGCTTCCAAGGCGCTGGTCGCGGATGTCACCGTGGCTTTTAGGGCGGTAACACGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //