Array 1 101485-100602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOB01000006.1 Escherichia coli strain HT2012001 NODE_8_length_345484_cov_33.332176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101484 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 101423 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 101362 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 101301 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 101240 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 101179 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 101118 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 101057 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 100996 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 100935 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 100874 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100813 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 100752 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100691 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118357-116986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOB01000006.1 Escherichia coli strain HT2012001 NODE_8_length_345484_cov_33.332176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118356 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 118295 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 118234 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 118173 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 118112 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 118051 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 117990 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 117929 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 117868 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 117807 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 117746 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 117685 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 117624 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 117563 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 117502 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117441 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117380 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117319 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117258 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117197 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117136 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117075 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117014 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //