Array 1 256478-258939 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDD01000002.1 Actinokineospora cianjurensis strain DSM 45657 Ga0180969_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256478 29 100.0 32 ............................. TCCTTGATGGCGTCAGCCGCGACGTCGGTGTC 256539 29 100.0 32 ............................. GAGCACGCCACCGCGCAGTGGATGCTCGACCA 256600 29 100.0 32 ............................. TCGTCCACGACCTCGCGGCTCGGCCCGGGGTG 256661 29 100.0 32 ............................. TGCGCGGTGGTGTCGGTGGCGTTGGCGATGGA 256722 29 100.0 32 ............................. TCGACGAGGACCCCGTCGAGCTCGGCCAGCTG 256783 29 100.0 32 ............................. GCCGGATCAAGTCCGCCCGGTGCACCCAGTTC 256844 29 100.0 32 ............................. CCCGGCATGAACGGGTTGTCCGGGCGGTGGGT 256905 29 100.0 31 ............................. CGGCGTGCCCGGCCGTGCTGCGGCTGGTCGA 256965 29 100.0 32 ............................. GTCGATGACGGTCTTGCGTTCCACCGCAAGGT 257026 29 100.0 32 ............................. CGCGCGATCCGGTTCACCGCCCGCGACGAGTT 257087 29 100.0 32 ............................. CCGAAGAGCCCGGTGAGGTCGACCTCGCCTGG 257148 29 100.0 32 ............................. ATGGCGATCACCGCGGCCATCCCGCCCTCGGC 257209 29 100.0 32 ............................. CAGCCGGGCAACACCTTGAGCAAGCAGGCCCG 257270 29 100.0 32 ............................. ACCCGTCCCGGGAACCGGGCAGCATCCTGCGG 257331 29 100.0 32 ............................. GCCCCATCGGCGTCGACCAACCGCACCACCAA 257392 29 100.0 32 ............................. TGTCGAGCGACCGGCAGGTCGCCCATGATCAT 257453 29 100.0 32 ............................. GACGCGACGCCGCCGACGAACTTCGTCAGGCC 257514 29 100.0 32 ............................. CACGGTCGAGCTGTACTTCCGACATCACGATG 257575 29 100.0 32 ............................. GACCTCACCCGCGACCTCGGGCAGGCGTTCAA 257636 29 100.0 32 ............................. TGGTACAGGCCGTTGCGCTGGTCGACGGTGAT 257697 29 100.0 32 ............................. GACAGCATCGCCACCCGGTCGTGGTCGCCGTG 257758 29 100.0 32 ............................. TGCTCAACCACCCGGTCAGGGCATGGGACGGC 257819 29 100.0 32 ............................. GGCGCGGTGAACGGCACGGTGAGTCCGCCGGT 257880 29 96.6 31 ............................G GGTGCAGGTGCCTCATAGCGTGTACCCGTGC 257940 29 100.0 32 ............................. TGCTTGATGTGCTGGATCTGAACCGGCACCAC 258001 29 100.0 32 ............................. GGCGCGGTGAACGGCACGGTGAGTCCGCCGGT 258062 29 96.6 31 ............................G GGTGCAGGTGCCTCATAGCGTGTACCCGTGC 258122 29 100.0 32 ............................. TGCTTGATGTGCTGGATCTGAACCGGCACCAC 258183 29 100.0 32 ............................. CGGCGCAAGCGCCACAACCTGGTCGGGGGGCT 258244 29 100.0 32 ............................. TCGCCCGACTTCGTCCTGGCCTGCACGTCCGG 258305 29 100.0 32 ............................. CCGCCAACGACGCCCTCGCCTGGCTCAACTCA 258366 29 100.0 32 ............................. GACGGAGCCATCATTTCCGAGCTTCACGCCGA 258427 29 100.0 32 ............................. TACGCGGCACCCGGCCCCCGACTTGGGGTGTG 258488 29 96.6 32 .............A............... TGCTCCGCCTGCTCGGGCGACATCCGCAGTGC 258549 29 100.0 32 ............................. TCGTCGACGAGCTCGCGCGCCGCCGCCCCCGT 258610 29 100.0 32 ............................. CGTCTGCGTGCTGACGCGCAGCATCTCCGCCA 258671 29 96.6 32 ............................G TCGAATCCGCGCGTTGACCGGCTCGTGCTGAA 258732 27 93.1 32 ............--............... CAACTCGGTCCCCTGATCCGAGTCGAGGCTGT 258791 28 96.6 32 .................-........... GCGAGGTCCACCGGCGCGAGGTCGATGCCGAC 258851 29 100.0 32 ............................. TCGTCGCAACTGTCGTTGGGGTTGTAGGCGGT 258912 28 89.7 0 ............T.......A...-.... | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.2 32 GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CTGTGACCGTCATCGTCGTCGCCGCCTGCCCGGTCGGCCTACGCGGCCACCTCACCCGCTGGCTCCTGGAAATCTCACCCGGCGTCTTCGTCGGTCGCATCAGCACTCGAGTACGCGGACTCATGTGGCAGCGGGTGACCGAGATGGTCAACACCGGACGAGCAATCATGGTGCACCACGCCGACAACGAACAAGGTCTGACCTTCGCCGTCCACGCCGCGGAATGGATCCCCGTCGACTTCGAAGGAGTCACCTTGATGCTCCGCCCCTCCGTCGAAGGACAAGAACACCAATCAAGCGGGAACAAGGGCTGGAGCACAGCAGGCAGACGCAGGCGTTATGGGCAACGCTGACAATGGGCGCCGTGAAGACGATGGCAATCGTCCACACCAATATCACGACGGAGACGCAGAGTGACCACAGGACTACCGGAGCGCACCTCCTGAGCGAAAGTGATGCTAGAAGCGTCTCCCTGGCTCTAAAACCGCACGTCAAGAAGT # Right flank : CTCACATGAACAGCAGCAGATACTTCGCAGGCAACGGACGGGCTACCCGGTTGCGACTGGGTGTGGTTCGCCAGTGAGTGCCGCGAGGGCTGCGGCGATCTCCGGAAGGCTGGCTTTGGAGTAGGTGCTAACGGAGGTGTCCTTGCCGGATTGGCCGTCGGTGTGGGCCGCGTAGGCATTGGCGACAGCGGGGCCGAAGATGCGTTCGACCCAGGTCATGACGCTGTGGCGCAGCTAGTGCGCGCTGACGCCGGTGCTGTCCGCCCAGAGGTGGTGCTTGCGGACGCGCCCGTAGAGGTAGTCCAGCCGTCGGTGTGAGATCGGTTCACCGTCGCGGTAGCGCAACAGCTGGCTGTCGTGTGGGGCGTGTCGCTGCGTGGCTTGGTCGCCCACGGCGACCAAGCGGGTCGGGGACACCGGCTGCCAACGCTCGGTGCCGCCCTAATCCCGCGACACTGCTGCACGTCAAGTCCCTCGGTCGTATCGCTAGTAGGCCGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 560238-560004 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDD01000003.1 Actinokineospora cianjurensis strain DSM 45657 Ga0180969_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 560237 31 100.0 35 ............................... TGTACGAGGAGCCCCCCGGCGAACGCGCGTACCCG 560171 31 100.0 35 ............................... GCGACGATCCTGATGGCTTCGCTGAGCTTCATGCT 560105 31 100.0 40 ............................... TCGAACGGCACGCCCGGACCCCGGAAGGCGCCGACGGTCA 560034 31 87.1 0 ...........T...........GG.G.... | ========== ====== ====== ====== =============================== ======================================== ================== 4 31 96.8 37 GGTCCTCATCGCCCCTACGAGGGTTCACAAC # Left flank : AACACAAATTGCGAACCCTCATAGGGAGACTGGTCCAACCAGGTGATCAAGGAGACGATAAACGACCACACCCGCATCTGCCAGCGCAATCACGGTGACACTGCCGACACGGACAAGTTCACCGGACACGGCGTCATTCGTCGCGTCAGCGCAGATCAAGGCCGCTGGACCCTGCGGCGAGTACTGGTCGGTGGATGCCAAGACGACAGAAGTCAAAACTGGTCCAATTTCACGCGCCGCTCCACAATCCACCGCAGTGGATCATGCCTGCCTCGCGGATCGACGAAGGACTCCATGGGCGAACCCATCGCAAGCAGTGTGGATGCCTACGATGTGCACGACACCTCACGATGACACTCCCGATCAAGGTGCGACCACACCCGACCACCACATGCCACCGTTCAGCGACACCCGGGCCGTACAACACAACCGGAGGTTCGCTGCACGACAGACCATCACACACCCCGCCACACCTCACCTGACCAGCACCTTTACCTTTG # Right flank : GCACCAACCTGGACTCGTTCCACCGCGTCGGTCGCTGGCGGCACCGCTGGGGCTGCCCCGACGTGGTCGAACTCCGCGACGCGGACCCCACGCTGCGTCTGTCCCTCGACGAGCCCGCCCACGCCACCCTCCTGCACGCCGCCTCACGCGGCACGGCCAGGCGATCCTCCACTCGGCCACCCCGGCAGCCGAGTACGGCTGGATCGGCAACCACGCCTTTGAAGCGGCTTGTCGTAGTGAATGGTCGTCAGGTGCGTCCATTTGGCGCGTGTTCGTTGGTAAGGATGGGCCATGGCAGGTCTGTGGAGCGTTCGACTTGTCGTGCGGCGAGGTCAGCGTCGACGAAGGTGTCGAACTCGCTGTCGGTTTGGTCCTGGCGGGCTGACGGTTGGACGTGGTGGCGGCGTTCTTTGCATTCGCGCCAGTCGGCGTATCCGGCGAGTCGGTGCAGCATCGGCCATAGCCATCGGTCGCGCCAGCCGGTCATGGTCGCTGAGGGT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTACGAGGGTTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //