Array 1 1127636-1128517 **** Predicted by CRISPRDetect 2.4 *** >NC_017574.1 Ralstonia solanacearum Po82, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1127636 29 100.0 32 ............................. CATATCTACCTGAACGAAACTAAGCGGCTCAT 1127697 29 100.0 32 ............................. CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA 1127758 29 100.0 32 ............................. CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA 1127819 29 100.0 32 ............................. GCCAGACCCCACATCGCGAGAATCCCAGCCCC 1127880 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 1127941 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 1128002 29 100.0 33 ............................. CCAACAACGAACTGGCTACTGCCATTCGTCGGC 1128064 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 1128125 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 1128186 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 1128247 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 1128308 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 1128369 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 1128430 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 1128489 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TTCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1137444-1138449 **** Predicted by CRISPRDetect 2.4 *** >NC_017574.1 Ralstonia solanacearum Po82, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1137444 29 100.0 32 ............................. CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC 1137505 29 100.0 32 ............................. GCTTCCGTGTGCAGCACACTGATCAGGCCAGC 1137566 29 100.0 32 ............................. CATCGGTGAAAGAGCATTCTTGACGGGCTGAG 1137627 29 100.0 32 ............................. ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 1137688 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 1137749 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 1137811 29 100.0 32 ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 1137872 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 1137933 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 1137994 29 100.0 32 ............................. GACTTGAACACCGAGGCCTGGGCCCAGGTCAA 1138055 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 1138116 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 1138177 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 1138238 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 1138299 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 1138360 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1138421 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //