Array 1 37470-39655 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEY01000052.1 Pseudomonas aeruginosa strain HUM-344 NODE_48_length_39734_cov_14.4535_ID_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37470 28 100.0 32 ............................ GATCTGTGCACGTATCTCCAGTGGTTCGGGTA 37530 28 100.0 32 ............................ TACGTCGAGCACGGTGCGTTCGATCCGGCAAT 37590 28 100.0 32 ............................ GACGATCTTTCCACCGTTACCACGGTGATAAT 37650 28 100.0 32 ............................ CAGCAGCGGGTTTCTACGGGCCGTGAAGAACG 37710 28 100.0 32 ............................ ATCACCGCCACCCGTTCCGCCATCGCCGCCAC 37770 28 100.0 32 ............................ TTGTCCAGCCTGTTTGACGTGGTGGAAGGCGC 37830 28 100.0 32 ............................ CGCCCGCCGAGCATTCAACCACTGGCCCAAGC 37890 28 100.0 32 ............................ TACGACTACACCCCGGTGCCGCCGCTTGAGGA 37950 28 100.0 32 ............................ TTGTCGGCGCCCTGGGCGTCAAGGCCGTACTC 38010 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 38070 28 100.0 33 ............................ CTGTTCCTGCGTCCAGATTCCGCACTCGACGAG 38131 28 100.0 32 ............................ TTCCCGCGAGTTCCACGTCGACGCGGTGAAGG 38191 28 100.0 32 ............................ ATCTTGGACGCTGATTCCCGCATGCTTATTGC 38251 28 100.0 32 ............................ AGCTCCAGGGAGGACCGGAGCGACAGGTACGA 38311 28 100.0 32 ............................ GCAAGAGGAAACCCTAATGCCCTTCGTCTATC 38371 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38431 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38491 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38551 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38612 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38672 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38732 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 38792 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38852 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38912 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38972 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 39032 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 39092 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39148 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39208 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 39268 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39328 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39388 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39448 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39508 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39568 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39628 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10227-8457 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEY01000091.1 Pseudomonas aeruginosa strain HUM-344 NODE_80_length_10253_cov_9.79476_ID_159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10226 28 100.0 32 ............................ TGCGCGAAAAGAAGTTGGAATTCCCTGTCCTG 10166 28 100.0 33 ............................ GTTCGTGGCTCATGGAAACAATTCCCGTTTGAC 10105 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGATGAACC 10045 28 100.0 32 ............................ CGGAGAAAGTCACGCGCTTCGAGACGCACCGG 9985 28 100.0 32 ............................ TGAATCTTCTTGTCATCGACCGTGCGGAACTC 9925 28 100.0 32 ............................ ATGAACGCAGCGATAACGGCCGAGCCGTTGAC 9865 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 9805 28 100.0 32 ............................ TCGGATTGGAGCGAGCTGGAGAAGCTACAGAC 9745 28 100.0 32 ............................ TGGGTGCGGGTGTCGCGTTTCGGCTGCTGCGC 9685 28 100.0 33 ............................ GTAATGCCGGTGCCGGGCAAACTCGCGGATCCA 9624 28 100.0 32 ............................ TGGACGAACACCGGCACGGAAACCGTCTTGCC 9564 28 100.0 32 ............................ TAGAACTTGTCGCCCGCTCCGCACCGCCGAGC 9504 28 100.0 32 ............................ CCTCGGCGAGCCGGCACGCCCCAGGACAGAAC 9444 28 100.0 32 ............................ ATTGCAGCGGCGAACCGCTGCGCCGCCATCAA 9384 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 9324 28 100.0 32 ............................ GTCTGGATGTTCGATGCGATGTCGGCGCTGGC 9264 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 9204 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 9144 28 96.4 32 ...........G................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 9084 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 9024 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 8964 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 8904 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 8844 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 8784 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 8724 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 8664 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 8604 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 8544 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 8484 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGCAGGTAGCGGAATTCGGGGGAGA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 761-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEY01000010.1 Pseudomonas aeruginosa strain HUM-344 NODE_117_length_1652_cov_6.44333_ID_233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 760 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGACCGGAAAACTC 700 28 100.0 32 ............................ ATCACAGTCGATACGGCCCCTCGGCCCGTCCA 640 28 100.0 32 ............................ AGATCGAGCAGGTAGCGGAATTCGGGGGAGTC 580 28 100.0 32 ............................ GATGGCTGCGAACTCGTCGATGGTTGCGCCGG 520 28 100.0 32 ............................ ATCGCCTGGCCAGCCAGCAGACCCAGCGAGCC 460 28 100.0 32 ............................ AACCGCAGATGACCGACAGGACGGCGATACCA 400 28 100.0 33 ............................ AAGATTGGCAGTGTCGGAAAAGGTAGTTAACCA 339 28 100.0 32 ............................ TCGCGAGCCTGGCGCACGATAACGGGCGTGAA 279 28 100.0 32 ............................ ACCAGAGCCATTGCCCTGACACTTGTTCGGGT 219 28 100.0 32 ............................ ATCTGGATGAGCAGGGTTGGAGACTTCCACAA 159 28 100.0 32 ............................ ACGCGGGCAATCGCGGCGGACTTCAACGGGGA 99 28 100.0 32 ............................ TTTGATTTCTTCCAGGCCTGCGCGACATACAC 39 28 75.0 0 .....................GGCAGTG | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GAACGTGTATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //