Array 1 69385-69901 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHPN01000422.1 Streptomyces sp. TRM66187 strain TRM 66187 1289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69385 29 82.8 32 ACCA.......G................. TCGCGGTTCGGCACCGGGATGCGCGCGGAGAT 69446 28 96.6 33 .........................-... TCCGCGCGGTGTGCGCGAACCGTGCGGCGGTAG 69507 29 100.0 32 ............................. GCGTTGAGCTTCTCGGGGCGGAGGATCGCCTT 69568 29 100.0 32 ............................. ACCACGAGGCGGCCCATGCGGTGGTGCGGGAA 69629 29 100.0 32 ............................. TCCTCCGGGCTCATGGCGTTGCGGATCGCGGT 69690 29 96.6 32 ............................T CGCCCGCTTGGCAGCGGCCTGCGCCTGCTTCG 69751 29 100.0 32 ............................. GACGCCCAGGCCGAACCCAAGGTGCGCGGGCT 69812 29 96.6 32 .................A........... GTCAACTCCTCTACAGGTGGTGGAGGAGGCAA 69873 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTCTATTGGGGTATAGCAATGTGGTACTCAGGAAATCAGTAACAGACGCCCTAGACATGCTGCGACATGCTGAATTTGGCGTCTGGTGACGCCATCGCAGACCTGACGACGGCCGACCGGTACATCGAGATGGCGTCGCGCCCCCGAACCGGCCCTGCTCGATCTAGCCGCGCTCGCGATCTGTGGGGGAGTGAAGCGGTAGGCAGCGGTTGTCAGTGCCGTATGGGGTGGTGCGTTTCAGACCTGCCTATGGGAAGAACCATAAGTACTTCGGACCGTCGTTCGTACATTAATTGTGATGTTGGTTAGCCGTCTGTGATCAGGCCGACGTCGGCCGGACTTCTGTCGGCCAGGTCCGAGCGGTACTGGATCTGTGCAAATCCCCGACGAGCCTGGTTCGCCTGCCCGGTCTCGCCGGGGATCACTCTTTCCGGTGGGGGCCATCCCCGCGGGTGCGGGGAGCAGAAATTGGTCGCGGCGTTCGTATCGCGCCAGCAGGG # Right flank : CGGCGTCCGGCCATCACGCCGCCCCTGGGACCTGGGACAGACACCTCTCCCACAGGGCACCGCGCCTTCGTTGCACCCCACAGCCCCAGCCATAAGAGGTTCACCGGAACGCTGAACTGCCGGATACGGCGCGGTCGCCGGTGGGAGTGCCCCGTCTGCGGGTCAACGCCAAGGGGCTTGACCCCGCCTTGACCCAGGCTGAGGAGAAGGCTGCGTCGGAAACGACCCGGGTGGCGTGCAGGAATCGGCGCATGAGTGGCAACTCCCGGGGCCCGGCGCCCCGTCGCATGGGGAGCAGGGCCGGTGCTCCCAGTCGGGGAAACCGGGTCGGGAGCGGGCAAGGGGTCTTTGGCTGTTCGCCGGCCGGGCCAGGCCGGCACGGGTGGGTGATCGCGGGGTCGGACGGTTGACGACAGCGCCCAGTGGCGCGGTAGGGCGCGGAACGCCGACCGGATCGGGTGACGGACGAATCGGGCGTCGTTGACCCGTCTGCGAGGTGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCAGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1399-630 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHPN01000411.1 Streptomyces sp. TRM66187 strain TRM 66187 1277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1398 37 100.0 36 ..................................... CACAATCCGATCCGATCCGTCACCGAAGACGGCCGC 1325 37 100.0 36 ..................................... CTCGCCATGAGCGGTGCAGCTCGCGCCTCCGTCGTC 1252 37 100.0 36 ..................................... ACCACGATGACCTGGGACGACAACACCACCTACACC 1179 37 97.3 37 .........................C........... CGCACGAAGCGGGCCGCGAAGGAATGGGGCGAGGACC 1105 37 97.3 36 ..............T...................... TACAGGGCCAGCGCGACGATCATCCCCAGCAGTGCA 1032 37 97.3 35 ..............T...................... CCCATCGACGACGCCGCGGCCGAGATCGAGCAGAT 960 37 97.3 36 ..............T...................... AGCGACGACGGGATCGACGGCGACCCGAGCGACACG 887 37 97.3 36 ...........T......................... CGCATGTTGGAGCCCCACGAGATCGGCCGGGCCATG 814 37 100.0 36 ..................................... GACATGCTCCGCGGCCTCGTGCAGCGCGCCAGCCGC 741 37 91.9 37 ....................G.....G...C...... GAGTTCGGACAGCCGATCTTGGTTGGCCACCACAGCG G [712] 666 37 81.1 0 .....C.C..T.G.T....G....T............ | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 96.3 36 GTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Left flank : CGCACACCGCGGCCGGAGGAAGCCGGGAACGGGTCAGGCTCAGCCAGTCGTGCAGCGACTGTGGGTCAGTGAGATAAGGCGTGCCCGGCGGGATCAGCCACAGGTAGACGCACCGCCGCTCCAGCGGCCGGCCCGACCGAGACGTGCACGCCCGGATTACCTCGTAGTGGTCCCCACAGGCAGGGCATGTCATCAGTAGACGGGTGTCGTCGACAGCTGCGGATTGCCCGGGGAGAACCTACCTCGAGGCGGGTCGTGGAGGATGATCACCGATTCGGCCCGCGATGGAGGCTGGTCTGGCGGCGTCCCGCATGCGGCCTCGGGCCGGCCGGATAAGGTCACACTACGAAGACGCCATCCTCGGACCTACTTCGGAACCACAAGCAGACACGCGACACGCCGATCGCACCGAAGCAAAATTTCGTTTATCGACACTTTTGTCGCCTGTAGGGGGCCGCACTCGTGGTAAGAAATGGGGAGTCTTCGCTGATGAACCAGGG # Right flank : ACCTGCCTCACCGATGAGATCTGCGAAGCCGCCTGGCGTGGCGGGCGCCAGCACCGGATTGACGCAGGCCCGGGTGGCGGTATACCGAGATAACCCGGAGATACGAAACTCAGTCTGTAGGGCACTACTCGCTCAAAAGTGGATTCGCATTCCGGGATGTAAGTTCTGACAGATCTCATGAAAGTGGTATTCCGCTTCTCGTAGAGCATTGGTGTCGTGGTCGTGGACCGTTCGCGATCACTGGAGGCGTTCACCGTGACACCGCTCTTGTTCATCGCTTTTCTGCTGCTGCCATCTGTTGTGGTCTCTGGCCCGTTCGCCGGTGTTGGCGTGCGCGAGTATGTCGGACCGGGGCGAGGCCGTCACCGACGTGTCGTGCGCGGGCGGCACGCAGCTCGGGGTGGGCGGCGATGATCCGGAACCCCGCCCGGGAAGCTGCAACGTGGGTCGTATGACGCTGGAGCAGTTGCACTCACAATGCGACGTCGCAGGCTCGCACG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGACGACCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11133-10006 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHPN01000411.1 Streptomyces sp. TRM66187 strain TRM 66187 1277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11132 37 100.0 36 ..................................... ACCGGATCGAGCCACTCGGAGAAGTGGCGCGGGCCG 11059 37 100.0 36 ..................................... TGCACGCCCTCATCGACGAGGCGCTGGAGGTCGCTG 10986 37 100.0 36 ..................................... CACATAAGGGAGTAGACTATGGCGACATGGAGTAAG 10913 37 100.0 36 ..................................... CTCGAAGCCAAGTCGAATCCGAGCGTTCCGCTGCTG 10840 37 100.0 36 ..................................... ATCCGCATGTACCCCGACCACACCGGCGGCGCCGCC 10767 37 100.0 36 ..................................... GAATGGCGCATCGCGTCGTACCGGGACGGCGACGGC 10694 37 97.3 36 ......................G.............. TCCGCACCCGGCGTACTGAGCGACGGCACCGTGCCC 10621 37 100.0 36 ..................................... CGGTGCAGTACGGGCAATATGCGCCTGTACAAGCAC 10548 37 100.0 35 ..................................... GGGGTGTGCTGGGTGGGGCCTCCCGCGCTCGGCGC 10476 37 100.0 36 ..................................... GACCAGGGCGAGACGGCCGTGAGCCTGAGCCGGGCT 10403 37 100.0 35 ..................................... GTGGTCTTGGGGCGGTGGCCGGCGGAGAGGATCCA 10331 37 97.3 36 ......................G.............. CTGTCGATCATCACGTGTGGGATCTGGGCCATCACG 10258 37 97.3 35 .............................G....... CGGGCGGTAGTCTCCGACACCGCGTAGGCCTGGCA 10186 36 97.3 35 ..............................-...... GGCGCACGCCGTCTCCCAAGGCCCTTGGGAGCCTC 10115 37 97.3 36 ........T............................ GCCAGGAGTGCCAGGACCTCGATGCGGATCTGCTGC 10042 37 97.3 0 ......................G.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.0 36 GTGGCGGTCACCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TTGTGGAAGTTCACATAATGGCCCAGCTTCTGACGTGGGCAGACGGCAAGGCAGATCGCGAGCTGTTTCCAACTTCAGCTTGAGCAGGTCAGATGCAGGGTGAGGACCGCACCCGCAGCAACCGCTTCAAGCGCTGAACACTTCGCGAAGCTTTGTGAAGGGCACGGCTTACGTGTCCAGAAGTCGGTCTTCGAAATCGTCGCCAGCGACGTCGACCTGCTGAAACTCTTGGCCGAAGTCGAGTACATCATCGACTCGGACCTGGACAACGTACGCGTCTACCGCCTCCCGCACGACGGCCTGACTCAGGTCCGCACGCTTGGAGTCGCCCAGATACAGTCACACCGCGAAGACGCCATCCTCTGACCTACTTCGGAACCACAAGCAGACACGCGACACGCCAACCGCACCGAAGCAAAATTCCCTATATCCGCCTCTTTGTCCTCTACGGGTGCTGGGCCCACGGGCGATCGATGCGGACTTTTCGCTGGTCAACCAGC # Right flank : TCCTCGGCGCACCAGGCGGAACGTGTTCCCGGAACCAGCCGAGGATCCGGGAACTGCTCGAGGTCTGGCCGGGCATGCCTGCGACGGTGGTGGCCGAGCGGATCGGCTGGCAGCGGGGGACGACAGTTCTGCGGGACCGGCCCATGCTCTGCGCTGATGCTCGCGCACCTTCGCGCCCTGGGCTCCGGGCGGTCACAAGATCCGTCGGACAGGCCCTGGCGTGCACGTCGGTGTGTGGACCACCCGATACGGGGCAGGCCGACAGGGTCCAGCACCCGATGAGGCACCAGCGGAGTGACTGTGCCGGGGACACAACTCTGTCGGTGGAGGCGGCGCCGGCATGGACGCGCGGTCAGTAGGCGTGATTCAGGCAGACACGAACGCAGCGTTCAGCCGAGTGGCACCTGTGTGTGCGGGGTCCACTCATACATCCGGTTGTCGCGGTGCAGCATGATCAGCTCGGCAGACGTGATGTGTGCTTTTGCCGGTGGGATGTCGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //