Array 1 154140-152256 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGH01000032.1 Lacticaseibacillus paracasei strain FAM4067 FAM4067_scaffold_0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154139 36 100.0 30 .................................... TTGTTCCCGATATAGCTTCTTTAACTCTGT 154073 36 100.0 30 .................................... TTGGCTATTAAGCAGTGACGACTGGTACAC 154007 36 100.0 30 .................................... CTATTGGCTTGTAAGACTGGAATCAGTGCC 153941 36 100.0 30 .................................... ATTTACCCCTATCAATAGGTATCTGCGCGG 153875 36 100.0 30 .................................... CTACTCCCCGCCAGGTTCATACTGTCAGCG 153809 36 100.0 30 .................................... GCTGGGAGCAATCGAAACATCTCAATCTAT 153743 36 100.0 30 .................................... AAACAATGTCTTCTATCTGGAAGAATATTG 153677 36 100.0 30 .................................... ATTGGTTCGTAGCTTTGCGCTTCCAGTTAT 153611 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 153545 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 153479 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 153413 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 153347 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 153281 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 153215 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 153149 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 153083 36 100.0 30 .................................... CTTTTATTCGGTTCACGTTGATATTTCAAA 153017 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 152951 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 152885 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 152819 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 152753 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 152687 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 152621 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 152555 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 152489 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 152423 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 152357 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 152291 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //