Array 1 31409-29196 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFG01000010.1 Streptococcus ruminantium strain DTK364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31408 36 100.0 30 .................................... CACTATCACCCTTACCTTTAACATCCGTTT 31342 36 100.0 30 .................................... GAATTGTTTAATCCTAACATGCCTTATCAG 31276 36 100.0 31 .................................... TACATGATGTTTGACTTGATTCCTCCCATTG 31209 36 100.0 30 .................................... CAATGTTAGGTTTGATCGTGTTCGCATCGG 31143 36 100.0 29 .................................... TGACCCCAACATTTTCAAGAATGCTCATT 31078 36 100.0 30 .................................... TTCTATAATGATGATTCGTCCAATGTCTGT 31012 36 100.0 30 .................................... GAGGTTAATATCAAGGGAGAGAAATACAAA 30946 36 100.0 31 .................................... AATCACCTGCAACCTCTCCGAAAGAAAAGCA 30879 36 100.0 30 .................................... TTGTTCAGGTTTTAAGCACCCTCTAACAGA 30813 36 100.0 30 .................................... GATAGCTCAAAGAATGACAAAGCGAATAGG 30747 36 100.0 30 .................................... GAATCAACTGTTAACATTTATAGGGATAAA 30681 36 100.0 30 .................................... AAACTGCAAAAGAAATAATTAAAAAGAGAC 30615 36 100.0 30 .................................... GTGCCAGTGGAAGTGGGGATATTGATTGCG 30549 36 100.0 29 .................................... CTACCTTAAGAGTATCGTTAATGTCTTTA 30484 36 100.0 30 .................................... TATTATTCATGAAAATGAATTGATCCATGT 30418 36 100.0 30 .................................... TTCTGCTAAAACTGTCGGCTGTTTGCTTGA 30352 36 100.0 30 .................................... CAGAATTTAATGTCACATTGCCGTCAAGTC 30286 36 100.0 30 .................................... TTTGGTATGGGGACACGACCATAAAGACCT 30220 36 100.0 30 .................................... TTAGTGATACTCTTAACATATACAGAATGC 30154 36 100.0 30 .................................... TCACCAAAATGATATACTTAAAACATAGAA 30088 36 100.0 29 .................................... CTTCTCCTTTATTTGAATAGTTCAGTGTT 30023 36 100.0 30 .................................... TCGGATATGTTGTCTGATATTTGTTGTTGA 29957 36 100.0 30 .................................... TAAGGTTTCCAGTCATCTTGGAACCTTTTG 29891 36 100.0 30 .................................... CTGGCTAGTCCAAAAATATACCAAAAAGGG 29825 36 100.0 30 .................................... TAGGCATTTCTTTTAGATCCAATGTCCTTA 29759 36 100.0 30 .................................... GGGAGGAGTAGTTATTGCCAAGATTGGTTC 29693 36 100.0 30 .................................... TGATCATTTTATTGAACTGAGCAATGAGTT 29627 36 100.0 30 .................................... GCTATCTTCAACGAATTAGATGAGCTATTC 29561 36 100.0 30 .................................... ACTGCCTAGCTGACAATCACGATATTTGTT 29495 36 100.0 30 .................................... GCAGTTTTGTAGAACCTGACATCCTGCCCG 29429 36 100.0 30 .................................... TCATATATAGTCACCTGCTCCATCTTTTCA 29363 36 100.0 30 .................................... GCCATTTCCCTGCTCAACTCGTATTGTTCA 29297 36 100.0 30 .................................... AGCCAGTACCAGTAGTAGATGGTAGTGGTC 29231 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACAATTGGAATCGCTTTATCGAAAATATCCATATTTCCATGTTATGATATTTCCTTCTCAAGAGGGATACCTATATCTAAATGAAAGCACGATTGAAACAGTGAATATCTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTTTATATGAGCGTTATAAAGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCTGGTAGAGATTTACTGACATTAAAGATAATGAATTCCCTCTATCAGTATGACGCAGATCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCCTGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATTTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //