Array 1 202168-201472 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJB01000001.1 Lactiplantibacillus pentosus strain krglsrbmofpi2 NODE_1_length_436028_cov_102.822262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 202167 36 100.0 30 .................................... AAAGAGGCACCACTGTACGAGGTCAAAACC 202101 36 100.0 30 .................................... ACGGATATGCGACAAGTGATTTAGCTACCA 202035 36 100.0 30 .................................... TGTATTCGCAAGAAATACGGTAAAGGACGC 201969 36 100.0 30 .................................... CCGATTATAAAGAATTTGGCGCGTGGAAGC 201903 36 100.0 30 .................................... TTCTGGACTTAGAACGCCCATCAACCAAGC 201837 36 100.0 30 .................................... TAACAGGCATCACACCCGTCCGGTGGTTTA 201771 36 100.0 30 .................................... AAACGTCTTTGGCATAGCCATTCATTGGCT 201705 36 100.0 30 .................................... TAGATTCAGAGAAAGAATTAGAACCAGAGC 201639 36 100.0 30 .................................... AAACCATACCATTAGAACCAACAACACAAG 201573 36 97.2 30 ..........................T......... TGATGGTTGGTCCTAATCCGGCAATTGCAG 201507 36 88.9 0 ........................T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGTTTGTTTATGAAGAAGATACAGGCCCAGATTATTAAGTTAATGGCCGATGAACAACAAGTAGCGGTCTTGGACCAAAGCCGATCCATGATTGCCAAAGTGATGGAAGCAAGTTTTCTATTGGATCTGCCACTAGATGTAGAGGAAGCGCCGGGCCTAGAACAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAAGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAATGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : ACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAGATCAGATTGTCACTAGGTGGACGATAAATTCTTTCTTTGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCATAATGACAGTAAAAGTACAAAAACAGGGTCATTCGCTAATGATTCCGATACCAACGGATTTTCATGTTATGGAGAACGCAGAATACCAGCCGGTTATGGATGATGACAACGGAATCTTATCGTTTATCCCAGTGCATAAGAATATCTTTGAACAAAATCCTGACTATGATTTCCAAGCCGCACTCAAAGAAATGAGTTTACCCGATAATGGGAAACTGGTTGGGAAAGAAAACGTTTGGAAATGAAGTAGAAATAGCATAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 13830-14345 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJB01000028.1 Lactiplantibacillus pentosus strain krglsrbmofpi2 NODE_28_length_16528_cov_60.975746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13830 28 100.0 33 ............................ CGGTGAAACTGATGAGTATACTTATTGGATGCA 13891 28 96.4 33 ..........T................. CAAGTAACCGTTAGGAACTGCTTTAATACGTTG 13952 28 96.4 33 ..........T................. TGTGTTAACACTCATTCTTCACCCTCCATTGAC 14013 28 100.0 33 ............................ TCACCTTCCTAAAACGGCATGTCGGCGTCACTG 14074 28 96.4 33 .....................T...... TCACTCATCCAATCACCACCAGTCGTAGGTTGC 14135 28 100.0 33 ............................ AGTGACGCCGACTACTGCAGCGACTACAGGAAT 14196 28 96.4 33 ......T..................... TTATACCACACATGCAGGCGTTTCAAGTGTCTA 14257 28 100.0 33 ............................ CGGTCATAGATTAGTGACCACATATACAGGGCA 14318 28 92.9 0 .................A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCGAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTCGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAATCCAAGTTAATGTAAAACCTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAATAAAGCCTAAAGTAAGAAAAAGTAACATGCAAATCACTCTAAATTTCTTACGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAGCGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTCGCTGTTGAATCCGCTTATCATTAATACGATGCTCTGTTGAGGCGTAAAAGTAGTACATCTTCAATCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 233573-233179 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJB01000002.1 Lactiplantibacillus pentosus strain krglsrbmofpi2 NODE_2_length_311373_cov_61.361042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233572 28 100.0 33 ............................ CATCAGCAATCCTTCACAGTAGCTTTCAAAATT 233511 28 100.0 33 ............................ TACTACTTGTCTGTGGCGTTTTAATAATGAGAG 233450 28 100.0 33 ............................ CTTATGTGAGTACGAAGTCGTGCATAGGAAGCT 233389 28 100.0 33 ............................ TCATCGTGATTTTACAAAGATAGATCCGTATGA 233328 28 92.9 33 .........A.....G............ GGAGCCACTAAGCTTAGTCGATGCTTGGGAACA 233267 28 100.0 33 ............................ TTGGGTTGTTATTCGGCCTGACGGTATGAATAT 233206 28 89.3 0 ...T.................T.....T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.5 33 GTACTCCCCGTGTATACGGGGGTGATCC # Left flank : GCATCCAAAGGGACGGGTTGTGCCACATGTGACCATTGAACAACAGAAAAAATGGCTAGAAGACCGTGCGACTCGAGCTGGATTTGAGTTGATTCGTCGTAGCAATGTAGAATCTGATACAATTCACAAGTTAGCATTCGATGTTGTAAGCCATGATTGGCCAGTGCTTCACCACCATACAGAAACTAGCGTTCGCATGAGCCGTGTTACGTTTGAAGGACTCTTACGTGTCAAAGACGTAACGGCCCTCAAGCGAACCTTGACGATGGGGATTGGCCGTGAAAGAGCATTTGGTATGGGCTTAATGACGGTTATTCCTGAAGCACAATGATTAGGATAGGCTTGAGTTGGTGAATCGTGGGTACGATATGATGTTTACTGGGGTTATCAGTGGCAGGCTAGTTTGATAGCGATACGTTACTGACTGTGTCAGAAACCAAGTTAACTAAAAACTGCCATGTGGTGTTTTCAGAAAGGCTTAGAAACGGGATTTATTAAGT # Right flank : CCATAATGCAGGCCAATTTTCACATTCATCACAGCCTAAAAAGCGAGCCCCCAACCAAGGGACTCGCTTTTCTATCACTCATAATACTATTCCGTATGATGTTTCCGCACCGGGCTGACCCAAGTTCCGCTACCGTAACCAAGAATTGTTTTAACGGCTGGGATCAGTGTTGTAACGAGGGCGAGTGCGTTGACTTGCCAGTAGATCAACATGTATAGCGGCATGAAAATCAAGTATTTGAATTTACGACCACGGTCATCGACAATCAGGGCTGACAGTAGCTGCAAGACACCGGCAAACATCTCGAAAGTCACAAAGATGAAGGCCATGCAGAACATGTGGTAAACCCGTTCGTAGTTGCCGGTAAAGAAGAAGGTGACCAGTGAAATTAAGAAAATCAGTGTTGAGACAAAGAAGAATAGGGACCAGATAATACTTAAGGTTTGGTCAGTAATGAACGCCCATTGCTTGAGGTATTTGCCAGGATGGCTTGCGACTCG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 243573-244032 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHJB01000002.1 Lactiplantibacillus pentosus strain krglsrbmofpi2 NODE_2_length_311373_cov_61.361042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243573 29 100.0 32 ............................. TACATGTAAATAATATAAAAAGTTTCAGTAAA 243634 29 96.6 32 ............................C CTAGTAGGTTCTTACGGTGCCTGAACGTTACG 243695 29 93.1 32 .........A..................C TTCTGGGCGGCGCTCGGAGTAGAGGCTGTCTG 243756 29 100.0 32 ............................. GAGTATAGAAAGCTAGCCGAGCCAATCGAAAG 243817 29 100.0 32 ............................. CAACAATTTGGAGAAAATTCAAAGCTGGAAAG 243878 29 96.6 33 ................T............ ATTTCGAAGGCTAAGGGCGGTGGCTACGATTTT GT [243887] 243942 29 96.6 32 ........T.................... TCTGAATGCTCTGCTCGGTTTAGATAAATTTT 244003 29 82.8 0 ..T..T.....A..A.....A........ | T [244028] ========== ====== ====== ====== ============================= ================================= ================== 8 29 95.7 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATTGTAGCAAGAACCCCGAAACCTCAGCTCAAAAAAATCATCCTCATACATCGAGAGAATGATTTTTTCAACGACGATGTTAATTGGGGGCCAGATGCCCCAATCCCTCTTCAAAAATCACCAAAGGAACGTCTGCCCAGGAATAGACATTCCCAAAGTTACTATTCCATCATACTTTCGGAATCACTACACCTTTGCTGGACTGCATTCACTTCAAGTTACACCGCCCAGACACTACAGCCTACCTTAACGAACAACATTATATGGTTGATTAGATGCTATTATTATTTTGCGGCATATGACATCTCACGTGGTGATTATCAAATTTACTATCTAGACACGCCATTTTTCACTCTGTACTTTTACTACTGCGTCCTGATGGTAAACTATTGATTTTATTTGGATCATACCTTATAGTCAAAGCACTAGCCATTTGACAAGTTGACCCTAAACAGTCATTTTCATATTTTAGATTGTTGATTTACCGGCATTTGTTTAGT # Right flank : TAAACTCAATGGTTCCTCAACGACTGCCACGTTCTCCGCACATGTAGTATTCCACCCGAGCCAGTGCCATTGTTCAATACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAACTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCCGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //