Array 1 4746-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000001.1 Cylindrospermopsis raciborskii S06 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4745 37 100.0 36 ..................................... TAGACTTGACAAGACTAAGCGCTCTAAATTGTTAAC 4672 37 100.0 38 ..................................... GGAGGTAACTTCGATGGGAACACATCAGATATCGATAT 4597 37 100.0 35 ..................................... GTGTTTTTTAGAACATACAGCAGAATAACTGATGG 4525 37 100.0 43 ..................................... TCTACCTAAGTAGAATTCTGCAAAGCCAGGAGCATAGGCAATT 4445 37 100.0 39 ..................................... TTTGCAATCCGCACTCAAAAGCGCATACATCAATCTCTC 4369 37 100.0 37 ..................................... GAGAATATCCAGGAGGTGATTACTCCCCTCCTAGCCC 4295 37 100.0 37 ..................................... CCATTCATGAATTATTTCTGAGTGGCTCATATCTTCG 4221 37 100.0 36 ..................................... CCTGACAAAAATTGACCCAAGCATGTCATTAAACTG 4148 37 100.0 41 ..................................... AATCTCAGATAAAGCTTTTTGAGACTTCAACTCATTTACTT 4070 37 100.0 36 ..................................... GTGGAACTAAATCTCTATTAACTGGTGCTTCCCCTG 3997 37 100.0 37 ..................................... GAATATTGGTGATGAGTAACTGGACACAGTCCAGTTA 3923 37 100.0 33 ..................................... CTCAACCAACCCTGACTCAGGGTTAACAGCAAT 3853 37 100.0 38 ..................................... ATGGTAGCATGATTGCATCTATTGTAATAGGTGACTAT 3778 37 100.0 35 ..................................... AAAAATTCAGATTCTTTCTCGAACCACTTGACAAT 3706 37 100.0 39 ..................................... AAGAAGAAGAGGAGGAGATATACCAAAATGAACATTACA 3630 37 100.0 34 ..................................... TTTTTTGGCTATCCCGCTTCAATTCGTTAATACA 3559 37 100.0 37 ..................................... TTTTTTGCGTCTTCTTTCCGCTTTCCCTAGCGGTGAC 3485 37 100.0 37 ..................................... CCTGTTTTTGGGGATAGAGTGTTGTCGGTTGACAGTT 3411 37 100.0 36 ..................................... AAAAGACCATTTCATTAACAAATGTTAATGTGTCTG 3338 37 100.0 37 ..................................... TAATAACTGCCGGATGTATTTCTGTAGGCTTTCTTTG 3264 37 100.0 40 ..................................... TAGTGTATCCTTAACATCATCTATAAGCCCATTTGCTAAC 3187 37 100.0 38 ..................................... AGATAGCCATAAAAACCGGGTATTAGACAGCTTAATCC 3112 37 100.0 38 ..................................... TTGCCATCTTTGTTGTCTCTTATTACCAGTACTTACAT 3037 37 100.0 40 ..................................... CACTTTATCCACAAATAGAGATTTAATAGACTTTATTTGT 2960 37 100.0 36 ..................................... AACACAAATCAATAAGATCTGAGACTAACCAGACGG 2887 37 100.0 38 ..................................... GCGGTTTTAGGTCGTGGCACGAGCTAAAACCCATGTCC 2812 37 100.0 37 ..................................... CCGGTAAAGGTGTTATCTCTAATACTGGTTGATTATC 2738 37 100.0 41 ..................................... AATGGCTATATTAATGTCCCCTAGTGTCGCACTCGACCCGG 2660 37 100.0 39 ..................................... GATATGTAGTACCGTTTAGATATCCTGGTTCGATATTTT 2584 37 100.0 40 ..................................... CAGCGCTATAAGGATTAAAACTGTGAATGCACATTACAAC 2507 37 100.0 35 ..................................... GGAAAACTGATCACACTGTGCTTAAACATTTATTT 2435 37 100.0 38 ..................................... CCTAACACCGCAATCAGTCCTCACCACGCCCGATAATC 2360 37 100.0 37 ..................................... TCTATGATGGTTTCCTTAGCGGCGGGTGCATCCCGCG 2286 37 100.0 36 ..................................... TAGTCATTTTAGGAGCTGTATAGTAGTCCTCTATAT 2213 37 100.0 37 ..................................... CCAGTGGTTTAACAGTTTTATTGCCGAATAGTAGCCA 2139 37 100.0 37 ..................................... AAAAACTCTTGCAACATCTTTTTGTTAAGTTATCAGG 2065 37 100.0 41 ..................................... ATCGTGCCAAACTCTATTACTTCTGCTAACAAAATTATCAC 1987 37 100.0 35 ..................................... TAGAAGGATACATAACGTTTTCAATCAATGATTGG 1915 37 100.0 38 ..................................... ATCTTGTAAACACAGGATAAGGGTTGAGGGGTGGATAG 1840 37 100.0 37 ..................................... CACAAATAAAGTCTATTAAATCTTTGTTTGTGGATAA 1766 37 100.0 37 ..................................... GAGGCTTACTTTAGTTTATGTAAGTCTCAACCAAAGT 1692 37 100.0 37 ..................................... ACACTATAATTAATAGTGGTAACAGAAAAAAATCTAA 1618 37 100.0 34 ..................................... AGTGCGACATTATACATTTGACCGTTCCAATAGA 1547 37 100.0 36 ..................................... ATAACTTAGACAGCGTGATATCTCCGGTATTGATAG 1474 37 100.0 36 ..................................... TGTTGTCAATAAATAAGTTATATTTATCATTCAAAA 1401 37 100.0 41 ..................................... TTATATGGAGTTTTTTTCAACTTTCCTTATTTTGCAAGTGT 1323 37 100.0 35 ..................................... ATTTTGCAAGTGTTTCAGCCATTTTTGGGTTCCGT 1251 37 100.0 35 ..................................... TGAGGAAATCCATCACACTAACTACCGTAAATCAG 1179 37 100.0 42 ..................................... GCGCATAACTACCCATTGGCACTGGGTTCATTCCAATCACTC 1100 37 100.0 38 ..................................... TCACCCGTAAAATCTACTGGCAAAAAAAATCTAGTTTC 1025 37 100.0 41 ..................................... TGTGGGTATTGATCCGTCTGGTCAGGGTAAAGATTACACTG 947 37 100.0 41 ..................................... CTCGAGAAAAAACAGGGATTAGACGCGGTACGCTCTAATTT 869 37 100.0 39 ..................................... TTTGCAAGCATTGTCATACCAAGATTTGTCATTCTACTG 793 37 100.0 35 ..................................... CTGTAGTTACGTTAGCACCACCTCCCGGTAAAGGT 721 37 100.0 34 ..................................... GCGTGTCTGTGTACCCGTTGCGACCAAACCAGAG 650 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAAAATTGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 213-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000020.1 Cylindrospermopsis raciborskii S06 NODE_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 213 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 291 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 366 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 440 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 516 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 588 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 661 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 736 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 813 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGAG # Right flank : CTTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5404-7221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000203.1 Cylindrospermopsis raciborskii S06 NODE_454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 5404 36 100.0 40 .................................... AGACAAAACTATCAAGGCTGTCTATAGCTATTCTAAAGAT 5480 36 100.0 34 .................................... TTTTCAACAGGCTCACAACCATCAACTGTTACAG 5550 36 100.0 39 .................................... TAAAACATCAAAATGAGTTGTAAATTTCATAGTAATAAA 5625 36 100.0 34 .................................... GTAATGAGTTGTATTTAAATGCACAGTTTTTGAA 5695 36 100.0 50 .................................... TTCTTGCGCAGCTGCCCAACCCGCATTTTTCTGTTCTTGACTCAAATAGT 5781 36 100.0 39 .................................... AATATTTGATTTAATTGACAAATCTTTAAAGGAGAATAG 5856 36 100.0 39 .................................... AATATGGGTTTTTTACAGAAGGGTTTTCTATTGTTAGAT 5931 36 100.0 37 .................................... TTACTGTAGATGCTGTCGCAGTTACGGTAACCACGCA 6004 36 100.0 39 .................................... AAATATTGTCTCAAAAGTATTGACAAACCAAAAAGACTA 6079 36 100.0 39 .................................... TTTTTAATTATTGGTTTTGTTTTACTATCATACTTTATA 6154 36 100.0 37 .................................... GAAACAGTGCTAGTGGTTAATCGGAGGGTTAATACCA 6227 36 100.0 39 .................................... AGTTTCCAGTGATCATTATTCGTTTGTAAGGCAGAGTCT 6302 36 100.0 46 .................................... TGTTGCAAACAGTGTTATATGTAGGTAAGAAAAATGATGCTTATAG 6384 36 100.0 37 .................................... TGGAGAGTTTAAGCTCCACCAAGGCGGCGCGGTACAA 6457 36 100.0 35 .................................... AAGGAAAGGCGTTCGATTTCCCCAACCACCCTCTT 6528 36 100.0 38 .................................... GAGCTGCGCACCATATAACTTGGGGTCACTCCCAATTG 6602 36 100.0 39 .................................... GATGGTATTTAGTTTACATGTCTTGTAAGTGTTATTTAC 6677 36 100.0 35 .................................... CTAAAAGATCATGTATTGCGTTTCTCTCGTTTCTG 6748 36 100.0 37 .................................... AAGTAATCGATGACTGACTCTAATGAGTCGAAGTCAC 6821 36 100.0 37 .................................... TCTGGGCGTTTTAGCGTTTTAGTAATCGCTTGTTCTA 6894 36 100.0 42 .................................... GGCTACAATTAACAGGAAGTTATGTAAATGGTGTATTAGGTC 6972 36 100.0 34 .................................... CTGAGGCGTTGCAGCGTTATCGGGGAAGAGCTTA 7042 36 100.0 37 .................................... TAAAAGGACAGAAAATAACAAATCTTTTTTGAATTTA 7115 36 100.0 35 .................................... AGAAGAGGAGGAAATATACCCAAATGAACATTACA 7186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 25 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTAGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : GTGCTTATAAGGATCAAAGTTACAAAGGAGTGACAGAGACCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1741-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000208.1 Cylindrospermopsis raciborskii S06 NODE_468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1740 36 100.0 37 .................................... GTGCGGCTTGGTGTGAATATAGTTTACAATTAAAACA 1667 36 100.0 37 .................................... GTGTTAGTGGGGTTGGTGTTGGTGGTCATGGTGTTGG 1594 36 100.0 37 .................................... AGCCAAATGAACTCTGATTCTTGCTGCCTTTTAGTGA 1521 36 100.0 36 .................................... ATCTTCAATTACAGTGCCAGTACCACATCCCATCAT 1449 36 100.0 39 .................................... CATCGGGTTGACTTCCTAGGTCGTTGCCAACTATTTTCT 1374 36 100.0 36 .................................... TAAATAGATCTCTACCCGCTCTTAAGGATGTGGATT 1302 36 100.0 37 .................................... TTATTAAATTACTGTCTAGATGAAGCACGAGAAGTTT 1229 36 100.0 36 .................................... CAAAAAAGACAATCAGTCCATCTTGTTTGATCACAA 1157 36 100.0 39 .................................... TTCTTCGATGAATTTGTTCTCGTTTATGTTTTTACCAAC 1082 36 100.0 36 .................................... ACTTCTTAACCCGCTCATACCCCCCTATTCCCCTTT 1010 36 100.0 42 .................................... AAATTGGAAGAAGGAGTGGAAGTGGAAGAAGGAGTTTCCTCC 932 36 100.0 38 .................................... AAACCTATTGACAAGGGAAACTTGACATGGTATATTGA 858 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTAGCTTTGCTGTTTACGGACAATTATGGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGGACAGAGACT # Right flank : GCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18792-18093 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000216.1 Cylindrospermopsis raciborskii S06 NODE_487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18791 36 100.0 37 .................................... GCGATCGACCCGGACTGGCTCACTTCCGCTTCAAAAC 18718 36 100.0 39 .................................... CGGCATCCCAGAGGAAGACCTTGCTGGGATTAGCATCAA 18643 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 18570 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 18499 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 18423 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 18352 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 18280 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 18203 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 18128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : ACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 23044-25347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000183.1 Cylindrospermopsis raciborskii S06 NODE_406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 23044 36 83.3 35 T.....CCG..AG....................... TTCTCAAAAGGACACCAGTGTCTTGTGAGTGAGTG G,A,T [23046,23049,23055] 23118 36 100.0 38 .................................... GATTTTATAAGGTCTCGTTTTTCTCCTATAGGAGATAG 23192 36 100.0 37 .................................... CTGGATTTTCGTCGAGGAATCTTTCTACTAAGTCCCC 23265 36 100.0 37 .................................... TTAAAAAAGCAGCAAGAGAAAACTACGAAAGAGGAAA 23338 36 100.0 36 .................................... TCACGCGTTAAATCACGCGCGACACATATCTCTTTG 23410 36 100.0 40 .................................... TATCTGTTATCCAGTGGAGAGCTGGAGGAATGGTTAGGGG 23486 36 100.0 38 .................................... CCAAAATGCACTTCCTCCACCTGACGGAGAAGGTAGTT 23560 36 100.0 33 .................................... GGCGTCGGTTAACTTACGCTTCTCTTTTGTCTT 23629 36 100.0 36 .................................... AATGACTCAGACGACCCCGCGCTTAAATCAGTAAAA 23701 36 100.0 44 .................................... TCGTCAGTCGCAATCCCGAAAGGATATCGCGTAGTTACCACAAA 23781 36 100.0 37 .................................... GGTTGAGGTTAAGGTTAATGAGCTCACTCCCCAGGAG 23854 36 100.0 47 .................................... TAACCTTTCAGAGGACACACTCATTGAGGAGGAGTTGAGACTCCTCT 23937 36 100.0 73 .................................... GGTGTGAAAGTTGTAATACGTCCAACCATCTACAGAACTCCATTTAGCTGGATGAAACTCACCATCAATCTTA 24046 36 100.0 38 .................................... TTCATAACCCTATTGAGGTACATCCTCAAGCTCAACAA 24120 36 100.0 38 .................................... ATCATAACAGCGTAGGATGAAAAGCGCGGAGTTGACGA 24194 36 100.0 39 .................................... TAAAGAACAAAAAAACCCCATCGAAGCTCTTGCTTAGAT 24269 36 100.0 37 .................................... CTACTCTTAATGGTATATTAAACGTTCAAGTAGTGTT 24342 36 100.0 37 .................................... TGTCACGTGGATCCACGTGACACTACGGGTGGCTAGC 24415 36 100.0 42 .................................... TTTAAGTGGGGTTGACTCTCGCGCTATAGCTGCATTGCGCAG 24493 36 100.0 37 .................................... AAGAACAATCTCTTATCCAACTCCGCTACTCCACTCT 24566 36 100.0 37 .................................... TTTCTAGGAGTTCAAGAAAGGTAAGAGTATCAATCAT 24639 36 100.0 38 .................................... TCTTCCGCTACCCCTTCAAAGTAGTTCCAGCCAATCTT 24713 36 97.2 35 ...................T................ AAACTATCTCCCGCTACCGTGCTGAAGCACGCCCT 24784 36 100.0 40 .................................... CCTTGTCCAAAGCTTCTGTGGGGGTATTCAGATTGTCCTG 24860 36 100.0 48 .................................... GCCCGTCCGGGTCACCTACCCGACCGATTACGGCAAGTATAAAACCGA 24944 36 100.0 34 .................................... CTGCATACGAACTGCTCAAGTGAAAACAAAAAGG 25014 36 100.0 41 .................................... GTTGGAGCTTTTTCACAATATAACGTGATTGAAGCTCGTCA 25091 36 100.0 37 .................................... GCAGTATTAGAGTCTGTTTTGTTTTCCTTATCTTCTA 25164 36 100.0 37 .................................... GATCAGTGCAGGAGGGGCATCCTGTACGTTAAATATT 25237 36 100.0 39 .................................... TCGCGTGAGCGAAAGTCGCAGCAGAGCAGGGTTCAAAAA 25312 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 99.4 40 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : TGAATTAGGGTTATTTAATATCGCTGTTTATTGGAAGAGAAAATATTGTCATAAAGGACCAAAAGAACCTTGGTATATCTTAACGAATCTACCAAATCTCAAACAAACTTTATGCCTCTATAGATGTCGATGGGGAATTGAACAATTCTTCAAAGATTGTAAAACAGGTGGTTATAATCTAGAGGATACTAAAGTAAATGAAACTCGTTTTTTAGCCTTAGTTTTATTAATTGTGATTGCTTATAGTTTAGCCACTATGTACGGTCAACGGATGAAAAAATTAGGGATAGAGACTTATGCCGGACGGATTCAACAACATCAGGACAATTACCCAAGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTACGGCATGGAATTATGGGCTGATTTAGCTCTGACCTTAATCGGTCTCAAACCTCATAAACGCCTCTTTTTCCAGCGTGGCTTTCAGGCTCTATCCCTTATTAAACAAGCTGTTTGACCAC # Right flank : TCCCTCCATTTTAAGCCCTTGCTCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAATCTCTTCGTTAATTACTGTTTTTTTTGTCTTTATTTTTATCATTATTATTCCTTATTACTTAAATATTTATATCCATTTTACCCTATATTCCCCCATATTATAACACATTTACAGCAAAATAATTCCTTAAAAATTATGTATATTTTATTTTTATTGTAAATAGCCTACTGTAAGTTACCGGGTGCAAAACTTTAAAGGTATATTTCATTGTCTGGATAAAAATGTATAGCTATGATTTAATATCATAAAACATAATACCAAATTACATAACTACATTTAGTTAAAAAGTATACGCCAAAATCCTTGCAATAATGGCTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3694-1738 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000279.1 Cylindrospermopsis raciborskii S06 NODE_641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3693 36 100.0 37 .................................... TAAAGGTATTACTTTCATAAGAGGTATAGAGAGATTT 3620 36 100.0 37 .................................... CTAGTAGACCACGTAGTAAGTGTAGGTTGTAAATCGT 3547 36 100.0 42 .................................... AATGAAAGTTCCCATCGGGTTGACTTCCTAGGTCGTTGCCAA 3469 36 100.0 35 .................................... CAAGAACAGCATTATCCATGTCCATTTCATTTTCT 3398 36 100.0 42 .................................... ACCTCTTCAAGTATTTCCTCGATTTCACTGATACAACAGCGA 3320 36 100.0 39 .................................... GTGGTGTTGGTGGTCATGGTGTGGGGTTGGGAGTTGGTG 3245 36 100.0 40 .................................... TAAACGATAATAAACGATTAATACAAAAACAACAAATAAT 3169 36 100.0 41 .................................... AAAATATTTTCCAGTAAGTATTATTATTTTGAAGTGCTTCA 3092 36 100.0 37 .................................... GAAAATAGCACTTCTTTTTTGAATTTACTGTTTGTTT 3019 36 100.0 38 .................................... AAATCCTTGAAGGGAATGAATTTGTGCTAATCATTCCT 2945 36 100.0 39 .................................... GAATAGCCGGAAACAACCCGGGTAGAACGGGAATAGCCG 2870 36 100.0 38 .................................... AACAGTACAATTAGTTGTTTTGTACATTCTCTTGTTTT 2796 36 100.0 34 .................................... CAACGTAAATCGATTAACCCTTTTTTAACACAAT 2726 36 100.0 38 .................................... CCTCAAAATATTTTTCCTGGCTTTTTGAAACCAACTTT 2652 36 100.0 35 .................................... TGTTGGTGGGCATGGTGGTGTTGGTGGTGTTGGTA 2581 36 100.0 37 .................................... ATGAGTTCCAAGAAAGCATTTATGGTTGGGAAGTATA 2508 36 100.0 34 .................................... TTAAAAACGGCTTACGAATACAATAGCTTAACAA 2438 36 100.0 40 .................................... TATAGGAGCTAAAAGATATAATTTTTCAGAGTGTTCCCAT 2362 36 100.0 36 .................................... CCTCTTCCGTGAGGTTGATGAAATTCATTTTGGCAT 2290 36 100.0 37 .................................... TTTCATAGCTTCACTATCGCTTACTAGAAAGATTCCT 2217 36 100.0 38 .................................... AAGTGTAGTATCACATGATCCTCTTTCAAGATAATACA 2143 36 100.0 36 .................................... TATCGTATATACGATATTGGTCGTTATCTTCTTTTG 2071 36 100.0 42 .................................... AAGTAGAATCGAACACCACTGGTCGTTTGACCAGTGATTCTC 1993 36 100.0 39 .................................... CCAAGACAAATCTTTTAATTCATCTTGTCGACAGAAAGT 1918 36 100.0 38 .................................... AACCTCTGCATAGCAGAGACAGTCACAGAGGGGTTTGC 1844 36 100.0 35 .................................... CCGCTGGATTGTGGTGAAGAATGATAGAACTGCGG 1773 36 86.1 0 ........A.....................A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.5 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AGGATGAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATTGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATAGGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAGAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 54401-51440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000043.1 Cylindrospermopsis raciborskii S06 NODE_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 54400 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 54326 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 54251 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 54179 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 54104 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 54031 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 53957 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 53884 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 53808 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 53736 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 53663 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 53588 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 53516 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 53442 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 53362 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 53286 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 53214 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 53142 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 53067 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 52994 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 52920 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 52849 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 52778 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 52703 36 100.0 37 .................................... GAAAAAGTAATAGAGCTATAGAGGGTGGGGTAGGGGG 52630 36 100.0 35 .................................... AATAAAATTATGAGAGTTCCAACAATAATCAACGT 52559 36 100.0 35 .................................... GGCTTGGAAACTTGAGGATAAGGACTGGTACGAGA 52488 36 100.0 35 .................................... GAGATTGATTATTGAAGGTAGCCGCGCGGCTACCT 52417 36 100.0 32 .................................... CAATGGGAGAAGTTAGCAGTGGGGAATTTAAC 52349 36 100.0 37 .................................... TATTACAGCCCTGTACCCGCTGCTGGTACCTACTATA 52276 36 100.0 39 .................................... GAGTTACCTCAAGAAGTAACTCCTCTTGAGGTAACTCCT 52201 36 100.0 39 .................................... CTATATTTCCTATAACTCCACCTGTAATAGAGATTGATT 52126 36 100.0 37 .................................... TGAATAATAACCCCACCAACACCACCAACCCCAACCT 52053 36 100.0 36 .................................... GTATTAGATAATCTAGATGATCCTAACTCTAACTGC 51981 36 100.0 37 .................................... TAAGGCTAAAGTAGATAGTAAACTAAAGACTTACGAG 51908 36 100.0 34 .................................... GTCTATATTATTAGTTATTAGACTTATTAGCTCT 51838 36 100.0 39 .................................... TAAGTTAAACCATGCGAGGTAGAGAAAGACTAGTAGGGG 51763 36 100.0 36 .................................... GTAAAGAGATAAAGAAAAAACCCCATCTAAGCAAGG 51691 36 100.0 35 .................................... GTAATCCTCCACTTCGATCCCTCCGTTATTTGCCC 51620 36 100.0 36 .................................... TTGAGAGGGACGGCCCTCATAAAGCCTTCCTCTTTA 51548 36 100.0 37 .................................... CAGGCGCATTGAGGCGATCGCGCAGGACAATTTGAAT 51475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 41 36 100.0 37 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 934-1780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHY01000143.1 Cylindrospermopsis raciborskii S06 NODE_291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 934 36 100.0 35 .................................... TCTGGGCCTCAGGATCCCTAGATATAAACACTTCT 1005 36 100.0 38 .................................... CAGTAAACCCTAGCCCAGAACACCTCCGGTGGCATCGA 1079 36 100.0 39 .................................... CTTCTTTCAACTTGGACAAGGTTTGGAAATCCAACAGTT 1154 36 100.0 42 .................................... GGATTTCCCTGTGGTTCCATCTCATATTCCCTCGGAGGAAGA 1232 36 100.0 40 .................................... CCTTTAGTTCCAGTAAACGATAGCCCCAAAAACCTCCGGT 1308 36 100.0 34 .................................... AAGAAGTCCACCACTGGAAACTCTGCGTCTGCGA 1378 36 100.0 36 .................................... TTAATTTAAGGAAATTACAGCAGAACTCTTCTAGTT 1450 36 100.0 36 .................................... AGGGGAAAAAAATGACTACAACAAATAAAAATACAG 1522 36 100.0 40 .................................... TACCAGGATTTATGGGTAGTACTCATAAATCCTGAATAAT 1598 36 100.0 37 .................................... TTATTTTCCGTGCCTCTACCCGACAAAATAAATGTTC 1671 36 100.0 38 .................................... CGGGGTTGTTTCCGGTCTACCCGGGGTTGTTTCCGGTC 1745 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //