Array 1 178691-177601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028724.1 Enterococcus faecalis strain CVM N60443F chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 178690 36 100.0 30 .................................... ATTAATCAAGACACCTAAGATTGTTCTATT 178624 36 100.0 30 .................................... CGACACAACTATAGGGGTGTAATGTATGGC 178558 36 100.0 30 .................................... ACCATACTTTTAAATACATGTCTTCTAGTT 178492 36 100.0 30 .................................... CACTTTACTATTGTTAATTTCCTCAGGTGT 178426 36 100.0 30 .................................... TGCAGCTGATGCAGTAACACGTAAAGATGT 178360 36 100.0 30 .................................... TTTGAACAACACCATCTTTTATTCCAACCG 178294 36 100.0 29 .................................... TTTTCTCAGTCATTTAATAGTGCCTCCTT 178229 36 100.0 30 .................................... AACTATTGACAAAAAACAAACTATAGTGTA 178163 36 100.0 29 .................................... AGTTTAAAGACTTAAAACCTGCATTGTAA 178098 36 100.0 30 .................................... TGATGAATGGTGAACTATTATCAATCAGTT 178032 36 100.0 30 .................................... TGACGGCCGCCTTCGCCATCTCTAACTTGG 177966 36 100.0 30 .................................... TAGGAGGTGCATAACGAATGAATACTGGAT 177900 36 100.0 30 .................................... ACGCCTATTAAAACAGGTGATTTAAGACGT 177834 36 100.0 30 .................................... TTGGGCAATCACGTACACAGGCACAACGCA 177768 36 100.0 30 .................................... TTAGCGGTATTTTCTTGCGAAGCAGGCATA 177702 36 100.0 30 .................................... TTGAACTCTTTATGCGTTTTATAATGCTTA 177636 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGGGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CATTACCTATGAACTAGCTTCTGACGTTTAGTTTTTACACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATTTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGTCAAAATCCGGGAAGATTTATTAATGTCCAAGGGGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 399742-399240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028724.1 Enterococcus faecalis strain CVM N60443F chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 399741 37 97.3 29 ....................................C TTCTTCTGTAATAATGCCATCATCTAACA 399675 37 97.3 29 ....................................A GTAGAGCTACAAAGAATGAAGCGACTGAG 399609 37 100.0 29 ..................................... GCGCCGTTATCCGTTCCTAGAACGCTATT 399543 37 100.0 29 ..................................... ACACCGTCTGGAAGTGTACCATGGAGGGT 399477 37 97.3 29 ....................................C CTATTATAATTAGTAGGGGTATCATGATC 399411 37 97.3 29 ....................................T CTAGAAGAATATAGAGCTACTAAAAACAA 399345 37 97.3 29 ....................................A CCAGAAAGAGTTTTACGATACTATGATGA 399279 37 73.0 0 ......T..C.........A.A...AA..T..CC..A | CA,A [399250,399255] ========== ====== ====== ====== ===================================== ============================= ================== 8 37 94.9 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : GTATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAATAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAAATAATTCTCCGAG # Right flank : AGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAATCCAATTTGCGATGACAACAGTTTTCCACTTTTTCTTCGTACCGTTTTCAATAGGATTAGCACTTGTTGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1839936-1841226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028724.1 Enterococcus faecalis strain CVM N60443F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1839936 37 97.3 29 ....................................T GCTTGTAATTTTTGCCCTAATGCTTCTTT 1840002 37 97.3 29 ....................................A TTTCTTCTAAAATACCCCCACCATTCTAC 1840068 37 100.0 29 ..................................... GAGGAAAAAAATGAAAATTAAACGACATG 1840134 37 97.3 29 ....................................A CACTTTTCCAGAGTTTGACCAAGCTTTAT 1840200 37 100.0 29 ..................................... TTTAGCAAGTCACTTTTTAGCAGTGGGAA 1840266 37 97.3 29 ....................................T GGCTTGTTGTTACGTGTATTACAGACGGG 1840332 37 100.0 29 ..................................... AAAAAAAGACTAGGAATTAACCTAGTCTT 1840398 37 100.0 29 ..................................... TTTGAAATTGTAAAAGATGTACCAGAAAA 1840464 37 97.3 29 ....................................C ACTTTTAGCAGACTTGCTATAAAGCTTTT 1840530 37 100.0 29 ..................................... TTTTCATTTAAGTAGTGCGCTTGATATGC 1840596 37 100.0 29 ..................................... CGAGAAAAAACGTATGGTGGAAATTGTTG 1840662 37 97.3 29 ....................................T AAAGCAGCTTCTAAAACAGAAGGTGAAAT 1840728 37 100.0 29 ..................................... ATTGGTAAGATTACATGACCTTTAGTACG 1840794 37 97.3 29 ....................................A AAGAAATGGACACATTACACAACGCTTTC 1840860 37 100.0 29 ..................................... TGCAACAAAAGAATATTGTTGTCAATGGT 1840926 37 97.3 29 ....................................A TCAGTTGTCGGGAAATTGCCGGAGCGTGG 1840992 37 97.3 29 ....................................T TCAAGAAAGCTATGGAAGTTCTGAAGCAA 1841058 37 97.3 29 ....................................T GGGGCTAAAGGTGTAGCACATCAAGTTTC 1841124 37 97.3 29 ....................................T AAAAACAAGACGAAATGAGGAAATTAACA 1841190 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 20 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //