Array 1 663-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXQ01000643.1 Staphylococcus felis strain F9 k127_1723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 662 36 97.2 29 ........G........................... AGAAGGCAGATACGTTGATGTAGAGTGTA 597 36 94.4 30 ...........G.............G.......... AATTCAGCAACGACAAGAATTATATAAAAA 531 36 100.0 29 .................................... TACGTTGATACGAAAGTTAACGATAATTC 466 36 100.0 29 .................................... AATTGATGAAGTAAATCGTTTTATCGAAT 401 36 91.7 0 .........................T......T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : TGTATAAAGGTATGAAAGAATTGGA # Right flank : CATTTTTTCTGAATTTTTAGATAGAATAACAATACTAGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATAATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 57-485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXQ01000186.1 Staphylococcus felis strain F9 k127_430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57 36 97.2 29 .........................G.......... TATGATGATAGATTTGCTCCTATGGAAGT 122 36 97.2 30 ......A............................. AAGTTCCAGCGTCAATAAATCTAAGCAGAT 188 36 88.9 29 ...C.......GT......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 253 36 100.0 30 .................................... GTTTGCATTCGTGTGGGGGTTTTGGTTCAA 319 36 100.0 30 .................................... TCTTCATCAGCTATTACTTCTTTACTTTGT 385 36 91.7 29 ........G...T............G.......... CGAAACAGTATATATGCCAGTGCGTATGT 450 36 91.7 0 ........G...T............G.......... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 95.2 30 GTTTTAGAACTACGATTATTTAGAAAGAAGTAAAAC # Left flank : CTATGATTATTTAGAAGGAAGTAAAACGAAGCACAAAAGTTAAACGAACTAAACAAG # Right flank : AGTTTGTATAAAGGTATGAAAGAATTGGATGTTTTAGA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTACGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGAGCTATGATTATTTAGAAGGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 8444-9330 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXQ01000469.1 Staphylococcus felis strain F9 k127_1138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8444 36 88.9 29 ...........GC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 8509 36 100.0 29 .................................... CATTCGGTTATATTCGCCCACAATCACCC 8574 36 94.4 30 ..............G....................T CCAAGATATACAATATGACAAACAAGATCC 8640 36 94.4 29 ..............G.......A............. TCTCGTGATGGTGAGTCCACTGTTTTGAG 8705 36 94.4 29 ............C............A.......... AGCTCATCACGTTCCTTGTTTGTCCAAAT 8770 36 94.4 29 ............C............A.......... TCCTTGCAAATACAACTATAGCACCAATT 8835 36 100.0 30 .................................... TGTGTCAGTAAAATCTTTTGCTGCCTTCTT 8901 36 100.0 30 .................................... AAAAATTCAATACAATAAAAAGTGCAGTAG 8967 36 100.0 30 .................................... GGGAAAAGGGAGATGTAACGCCCAAAAGCA 9033 36 100.0 30 .................................... ACTTGTTGTAACTATTGAAGGTTATTACGA 9099 36 100.0 29 .................................... TTCTTTAAGCGTCCTCCTGAAGCAACTTC 9164 36 100.0 30 .................................... ACGGAAATGTGAGTATAGATCAGTTTAATA 9230 36 100.0 29 .................................... AAGCTTTTTAGCATTGTCGATAATCGTGT 9295 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.6 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACATGCTTTATTTAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCTAAATGGTAAAAACTATAGTGTGTATTTTTGAGTT # Right flank : GA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //