Array 1 8666-10524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYW010000018.1 Escherichia coli strain PBIO1946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8666 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 8727 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 8788 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 8849 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 8910 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 8971 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 9032 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 9093 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 9154 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 9215 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 9276 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 9337 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 9398 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 9459 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 9520 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 9581 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 9642 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 9703 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 9764 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 9825 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 9886 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 9947 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 10008 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 10069 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 10130 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 10191 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 10252 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 10313 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 10374 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 10435 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 10496 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43220-44163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYW010000044.1 Escherichia coli strain PBIO1946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43220 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 43281 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43342 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43403 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43464 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43525 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43586 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43647 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43708 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43769 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43830 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43891 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43952 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44013 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44074 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44135 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCCACTTTCTCTTCTACCAATCTTGCTCTGCCCACCACTGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //