Array 1 851553-853715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050263.1 Erwinia amylovora strain FB-207 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 851553 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 851614 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 851675 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 851736 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 851797 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 851858 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 851919 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 851980 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 852041 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 852102 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 852163 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 852224 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 852285 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 852346 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 852407 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 852468 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 852529 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 852590 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 852651 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 852712 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 852773 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 852834 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 852895 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 852956 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 853017 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 853078 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 853139 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 853200 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 853261 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 853322 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 853383 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 853444 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 853505 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 853566 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 853627 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 853688 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 864623-866606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050263.1 Erwinia amylovora strain FB-207 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 864623 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 864684 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 864745 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 864806 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 864867 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 864928 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 864989 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 865051 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 865112 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 865173 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 865234 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 865295 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 865356 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 865417 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 865478 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 865539 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 865600 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 865662 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 865723 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 865784 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 865845 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 865906 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 865967 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 866029 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 866090 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 866151 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 866212 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 866273 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 866334 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 866395 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 866456 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 866517 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 866578 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 876070-876398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050263.1 Erwinia amylovora strain FB-207 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 876070 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 876130 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 876190 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 876250 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 876310 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 876371 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //