Array 1 15538-15276 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000064.1 Leptospira noguchii str. 2001034031 ctg7180000007010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 15537 36 100.0 34 .................................... CAAAAATAAGTAACCCTTTAACTCAAGATGATGT 15467 36 100.0 40 .................................... TCAACGAGATCATAAATTACATCAATTGAACGTTTCTTTC 15391 36 100.0 44 .................................... ACGACTTACCTTGAGACGCGGCGATGTCCCCAAGTCTCTTCATA 15311 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 40 TTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TTGACTCCATGCTCTTTGCATTGAACTCGTGGAATTCGGGCATGAATCAATGTCTGAAATTGCATCGTGTCCAAATGACGCCACGTTCTTTTTTCTGTATGATCTTTACGAGGACCTAGTTTACCACAGTCCGGGCACTCTACCATTTCTTTCTCATCGTATACGACTTCGATATCTACCCTCTTAGTTGTTACATTTAATTCAACGCTTTCAACAGACCACGGTGATAAAATTCCTAAAAGAAGCGAATAATGGGCTTCTAACTTTTCGTTTGGGTTCATTAGAAATATTATTCATTTATTATATTTTACTTTTTCAATGAATTATTTTTACAGACAATTCATTTCTCATATTACCGTCGTTTATGTAGTAGTTCTTTCCCATGATATTACCGGAGGAGCCAATTTTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAAGCTAATAAAGATTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : TTAGGCGCTGGACCTTGTTTTAGATTTTTGTTAGACATTTCTTTCTCTTATCAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTCAACTTTATAGTAAAATACAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTCTCGGAGAATGTTTTAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCGAGTAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 11746-10499 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000054.1 Leptospira noguchii str. 2001034031 ctg7180000007017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11745 37 100.0 34 ..................................... TCTGCCTGGGCCATCGCATCGAGCGTCGCCTGAA 11674 37 100.0 34 ..................................... GAGAATACATGTGCACCTTTGAGCAATTGGACAT 11603 37 100.0 36 ..................................... CATTTTAATGTATTTCCGTTTTCATCCGTGTTTCTA 11530 37 100.0 34 ..................................... CACTTGGCTATAATCTGATCCACTGACTGATTCT 11459 37 100.0 34 ..................................... GCCCGTGTCGAAAGTCAGTACTCGTGGCATCGTA 11388 37 100.0 33 ..................................... CCTCCGTTTGCCAACGAATGAGCGTTTCGAGCT 11318 37 100.0 33 ..................................... TTCAAATCGGAACTGCTTCGAGTGGTCTCATCT 11248 37 100.0 35 ..................................... TATTTTTCTAAGTCCTTCTTGGATCACCGTTTTCT 11176 37 100.0 33 ..................................... TTTTCTGCTTTGGTTTTTATAAGACTCTGTGCT 11106 37 100.0 35 ..................................... ACTGAATTTATAGCGATGAAAAAGTATTCCCCCTT 11034 37 100.0 35 ..................................... ATATTTTTGTCGCAATTCTAATGGAAGCTGTCGTC 10962 37 100.0 34 ..................................... GAACCACTCCCGCGCTTTGTTTGAAAGTTCGTAG 10891 37 100.0 36 ..................................... TGGGTTTAAGCTCATCGCTTTAACTCCAGATCTTGC 10818 37 100.0 33 ..................................... TTGGATGGCTTTATCTCAGTTTCGCATTGCTTT 10748 37 100.0 35 ..................................... TTTGTTGCCCGTGATCTTCCAAAGGGTCTTGAGTT 10676 37 100.0 33 ..................................... ATTATGTGCTCACTTATAGAAACTTGAAGAGAA 10606 37 100.0 34 ..................................... CGGAAAACCCTGAATATAAATAGTTAACGGAATA 10535 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 99.8 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : GGTTATTTCTCATCTGAAATACGATCACAATATGATTCGAAATTTTCTCAAAGGTAAAGAAGGCGATCGTATCAATGCTATCTTATCCGCTGCTGGGTTTAATTTCTCTAAGCTCATTCGAGCTTTTTTTTGTTATTTCGAAAATCTTATCTCTTCATCGTTTTTATTTTCAATTTGAGTCTTGTTTCTTTTCATTTCTGAAAGACCTCAATTTTTCAGGGACGACTAATTATGTCTAGAAAAGTTAATAAAACTTTTTCTAATACATCTATTAGGGCCTTTATAGCCGC # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAATCACCGTAAAGCATCAAGAAGCCACGTAAAAGTCGGTAAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGAAACAGATTAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTTTGAAAGTATTACACAGAGAAGATGGGAGACCGGGCTTACAAATACAATTGTTAGTTAGACTTCACTACTTAGAAAACGTGTATAACGTATATGATGAGAAGGTGATTTAAAAAATCCGTATTAGCAACATTTCAAGTGGCTAGGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCTAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 6488-6945 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000116.1 Leptospira noguchii str. 2001034031 ctg7180000006934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6488 29 100.0 33 ............................. TTTTGATTGAAATTTCAAGATCGGTAGCAGATA 6550 29 100.0 32 ............................. AAAAAACCGGAATTCTAATGAGTAGAATTATC 6611 29 100.0 32 ............................. AAACAGCTGATTGAAACAATTTTGATGATAGC 6672 29 100.0 33 ............................. GACGTTTCTTCTGAATTAAAAATTCCAGTTTTA 6734 29 100.0 32 ............................. AAACAGCTGATTGAAACAATTTTGATGATAGC 6795 29 100.0 32 ............................. AAAGATTGATTATTCGATAACTCTATTATAGA 6856 29 100.0 32 ............................. TCGGAACTACATTCTACAATTGCCAACCTCAA 6917 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATCAGATCTACTATACAAATTCTTAGA # Right flank : GAGATTTAACTAATATGAGTTCGGTCTAAGGAGAGATTAAAAGTTGTAAATTGTTTTTAGATCTCAAATTCAAAGACGGTTTTTTTGGAAAGAATGAAAATGCAACTAAACCACTTAAAAGATTAACAGCCCAATTGCAAAAGCTGCGATGTCTAGTATGTTGAATCTGGCATATATTTTTAAGTTCATCGTTAACCGATTCAATGATAGCTCTTTTTCTTAAAAGAATTTTGTCGACTAAGAGCCGGTCTCAAAACTATCTATTAAAGAAATTGAAAACAATAATAGTGCTGGCGAGGTAAAGAGAAGCCATATAATTTTCCGATTTTCTTTCCCAACGGATAAGGATCGCTCTGAATCGATTGTGCCAACTGTTCGTTCTTTCAACGACCCATCTTCGAGGCTTTCCATTATATTTACCGATCAATGGTTTCTCGCCTCTTCTTCGAATGTGAGGCCGGATATTTCTTCTTCTAATTAATTTTTCCGTATCTTTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52771-50742 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000110.1 Leptospira noguchii str. 2001034031 ctg7180000006947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 52770 37 100.0 34 ..................................... ACCTAAAAATAAAAAAACCGCAAAGTACTTTAAA 52699 37 100.0 33 ..................................... TCCGTTTTCTCCAGGGAGATACCAAATCGTTTT 52629 37 100.0 34 ..................................... TCTCTAACGAAATTCCAAATCGTTTTCCGGGTTG 52558 37 100.0 33 ..................................... ATACAAGTCATTCGACTTTTCCCCAAAATACCC 52488 37 100.0 34 ..................................... TTATGGAGCGTCCATTAGAGTTTTATAATGAAAA 52417 37 100.0 33 ..................................... TTGTGGTTTTAAAGGTCTCTCTATTAAAGATTT 52347 37 100.0 35 ..................................... TGTTTGTAAGCCACCGGCTCATATATGAATAACGT 52275 37 100.0 34 ..................................... TCTAAGAAAAAGTCTGCCTCCGTTTCTTGACGTT 52204 37 100.0 34 ..................................... ATTATGTTGCCGATCATATGGCGTATTTTAAGTT 52133 37 100.0 34 ..................................... TGTAATACTCATAATCACAAGCAGCTTCTTTTAG 52062 37 100.0 33 ..................................... TTAATGAGGGAATTTCCCTCAACATCCACACAC 51992 37 100.0 34 ..................................... AATAGTAGTGTGTTTAATTAGCTGCACGTAAATT 51921 37 100.0 35 ..................................... TGGAGTAACCTGGAGAATCCCGTCAATACTCCCAC 51849 37 100.0 34 ..................................... AATAGTAGTGTGTTTAATTAGCTGCACGTAAATT 51778 37 100.0 35 ..................................... TGGAGTAACCTGGAGAATCCCGTCAATACTCCCAC 51706 37 100.0 36 ..................................... ATCTGCGCCTAACCCATACACAATAGAAAAGTTTAG 51633 37 100.0 33 ..................................... ATTTTTAATCTCCTTATCCTGGGCAACAGAATC 51563 37 100.0 34 ..................................... CCGATTACCGTGATGGTAGGTACCCTTTATGGAG 51492 37 100.0 34 ..................................... ATAGATATGTGAATCCATAATAAAAAGCCGGTTG 51421 37 100.0 35 ..................................... CTCAAATGAATTCATTTTTTTTAACCTTATAAGTT 51349 37 100.0 34 ..................................... TTCATCCATTGGATCGGATTCTTTTAATCGCCTC 51278 37 100.0 34 ..................................... TATATCAATAGACAAGTTTCCGTGTTTTGTTTTT 51207 37 100.0 36 ..................................... ATTTTGTAAGTAGAAAGGAAGTGAGATGAAGTTATC 51134 37 100.0 34 ..................................... TATATCAATAGACAAGTTTCCGTGTTTTGTTTTT 51063 37 100.0 34 ..................................... ACCTACACAGTTAGGTGCAATAGTAGTATAGGAC 50992 37 100.0 35 ..................................... TTAGATAATCTTCGATCTGGCTCATCATGTCTTGA 50920 37 100.0 35 ..................................... TCTGATTGTGGCTCGGTTGTCTCAGCCTTCTCCTC 50848 37 100.0 33 ..................................... CTCCGCAAAATCCAAGAAGAAATTGAAGATAAT 50778 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ==================================== ================== 29 37 99.9 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : GAAACTAAAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATATAGCAGAAACTGATGGAAAATTAATTTTCAATAAATCTAATGTTTTTAAAATAAATCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATTATTGACCCCAGAAAGACGATTATTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAAAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTCAGTCGGATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGTGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTCACCGGGTTTTTCGATGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATAATAAACTCAATGCAACGACTCCCTATGGGTCGTCGTCGCAGCTCGCAAATTTCATAGTTAAAATGGCTCACGACCCGTCGAGCGACCCTAGAAGCGAGACGCTGAGTTTCAAACGCTTTCGTAAAAAGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 105976-106653 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000093.1 Leptospira noguchii str. 2001034031 ctg7180000006942, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 105976 37 94.6 33 ...............T.A................... TCTTTATGGTGAACGTAGTATTTACCCTCTTCT 106046 37 100.0 34 ..................................... TCCAAACGCAATTCATATTCCGGCTATACGTGAA 106117 37 100.0 36 ..................................... ATTCTCTGGGTTTACTTGTGCCCAAATGTGAGGTAT 106190 37 100.0 36 ..................................... ACCTTTTTCATCTATAGCGAAATCACGGATTTGATT 106263 37 100.0 34 ..................................... TGCTTCTTTCAGGGTTTCGTTGTAGAGGGCCTGA 106334 37 100.0 34 ..................................... TTTTTCAGGCATTTCGGGGAACGCCTTGCTTACG 106405 37 100.0 33 ..................................... TTGTTCCTCTGCTCCATCCCCGCATTCCGAAGC 106475 37 100.0 34 ..................................... GTTTTTGACTGGGTTTCCGTTGCAACCTTTAGAA 106546 37 100.0 34 ..................................... TTTTTGCGCTTAATTAAATACCGGATCTCACAAT 106617 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 99.5 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TTTGACTCCATGATCCTTACATTGAACTCGTGGAATTCGTGCATGTATCAAGGTCTGAAATTGCATCGTGTCCAAATGACGCCACGTTCTTTTTCTGTATGATCTTTACGAGGACATCGTTTACCACAGTCCGGGCACTCTACCATTTCTTTCTCATCGTATACGACTTCGATATCTACCCTCTTAGTTGTTACATTTAATTCAACGCTTTCAACAGACCACGGTGATAAAATTCCTAAAAGAAGCGAATTATGGGCTTCTAACTTTTCGTTTGGGTTCATTAGAAATATTATTCATTTATTATATTTTACTTTTTCAATGAATAATTTTTACAGACAATTCATTTCTCATATTACCGTCGTTTATGTAGTAGTTCTTTCCCATGATATTACCGGAGGAGCCAATTTTGTGCAGTATGCTGAAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGCCTTTGTTTAGATCACGCTCTAAACTCAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 1966-1076 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000081.1 Leptospira noguchii str. 2001034031 ctg7180000006912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1965 37 100.0 33 ..................................... ATATTCAAAATAAATTAGGTTATAATACGTATG 1895 37 100.0 35 ..................................... CTATTTCAAAATTCCCGTATTGATAATGTCCTAAT 1823 37 100.0 35 ..................................... TCTAAATACGTTTTACCTGAGTCCCAAGATGTGTT 1751 37 100.0 35 ..................................... TTACCAAGATCCCAAACACGGAAACGAGATTTTTT 1679 37 100.0 35 ..................................... TCGGACATAAATGTGGTCTTATTAAACCTTACTTC 1607 37 100.0 35 ..................................... CAAATTTGTAATATTCAAAAGTCCGTCAAAATCAT 1535 37 100.0 34 ..................................... TTACCATCGAAAAAGCACTTACACAATTTATCCA 1464 37 100.0 34 ..................................... ATCTTAGCGCTTTCCGCGTTGTATCCGTTGGCAT 1393 37 100.0 34 ..................................... ATTTTCCTGGCAATCATAGTACGAGTGATTTTGG 1322 37 100.0 34 ..................................... AGAAATCTCTGTTTCGATCTCTTTGCTCGCATCT 1251 37 100.0 34 ..................................... CTTTTTGAAGTTCTCTGATTTGAGGCATTATCAA 1180 37 100.0 33 ..................................... TAAGTAACTCCAAGAGTCCGCCCGTGCTTTTTC 1110 35 86.5 0 .......A...A....A....--.............. | ========== ====== ====== ====== ===================================== =================================== ================== 13 37 99.0 34 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : CCTGTTTCTCTCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTGAGTGGCTCCTCCGGTAATATCATGGATAAAGGTTCAAACCGCCTAAATGAAAGAGAATAGAGATACGAAAGAATTGGAAGTTTCTAAAGCCTCTTGCATTGGATTTAATTTTTTGAATTCTTGAATTCATACTTTCCGAACCGGCGTTTGTAATACGATGAGAGAAATAAGTAAGGATGTATTTAAGGTTCTCTTAAGCATTTTGGCCACTTTGATGATCGGTTTAAGTTTAGAATGAGTGGCCCAAAAATACCAACGTTTGAAAAACTTTTCCGCGCGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGACAATTTTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAAGCTAATAAAGCTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGTTTGAGATGAGTTTCATTTAAAATTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACCATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATAACTTTTATCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACTTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTCCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATTCTGTAGACTACAGAATTTATATTGATTTTGAGAATTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1090-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKXB02000080.1 Leptospira noguchii str. 2001034031 ctg7180000006987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1089 37 100.0 36 ..................................... ACAACACATGAATTATCATGCAGAGATGTAATGCAC 1016 37 100.0 34 ..................................... ATAGACCTCTACAACTTGGTTTCGAATCATCTGG 945 37 100.0 34 ..................................... ATAGACCTCTACAACTTGGTTTCGAATCATCTGG 874 37 100.0 33 ..................................... CTTCCAGCCCTCGCCATCTACGTATAAGTTAAC 804 37 100.0 34 ..................................... TTGGCGACATGTGTGAAGACCCTTTTGATCAATT 733 37 100.0 34 ..................................... TCTGCTTTTTTGAGATCTTTATACATATGGGTAA 662 37 100.0 36 ..................................... TTCAGCGCCGAATTTGTCCACCGTGATAAAGCTCGG 589 37 100.0 34 ..................................... TTCTTATCGCCGAAACCGTTCAAATGCTGCTAAA 518 37 100.0 34 ..................................... TTCATCGCTGTTTGGGAGTATACATTTTTTTAGA 447 37 100.0 34 ..................................... TATTCGTTCACGTAAAACATTAGACCTTACTAAT 376 37 100.0 34 ..................................... AATGGCTATGTTTTGGAAGTGAGTCCAACAATTC 305 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 100.0 34 GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : GACTCCATGATCCTTACATTGAACTCGTGGAATTCGTGCATGTATCAAGGTCTGAAATTGCATCGTGTCCAAATGACGCCACGTTCTTTTTTCTGTATGATCTTTACGCGGACAGCTTTTACCGCAATCCGAACATTCTACCATTTCTTTCTCATCGTATACGACTTCGATATCTACCCGCTTAGTTGTTACATTTAATTCAACGCTTTCAACAGACCACGGGGATGAAATTCCTAAAAGAAGCGAATTATGGATTTCTAACTTTTCGTTTGGGTTCATTAGAAATATTATTCATTTATTATATTTTACTTTTTCAATGAATAATTTTTACAGACAATTCATTTCTCATATTACCGTCGTTTATGTAGTAGTTCTTTCCCATGATATTACCGGAGGAGCCGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATAATTTTCAACCCTATTAAGCCGCT # Right flank : CTAAACGCGGATTTATATAACGTGAGTTCAGTCTAAAGAGAGATTAAAAGTTGAATTAACCTAGTTACGAATTATTGGACACATTTTTACGCAGCATTTACTTCAAATTGCACAGGACTCACAAAGTCTAATGACGAATGAGATCTGTGTCTATTATAATAAACTTCTATATGATCAAAAAGTAATTCTTCCGCTTCTTGAATTTTATAAAAGTAATTATATTCCATTTCTCTTTTCAGAGAACCAAAGAAGGACTCAGCGACTGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //