Array 1 4378-3615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNO010000011.1 Listeria monocytogenes strain F6214 NODE_3_length_467700_cov_66.306_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4377 36 100.0 30 .................................... GCAGTTTGCTGTTCCTATTGAGGAAGTGGA 4311 36 100.0 30 .................................... AATAGGGTATTTATGATGGCGCACGTCTAA 4245 36 100.0 30 .................................... GTTATACTTGGCGTAGTAATTATTTTTGGC 4179 36 100.0 30 .................................... AGCAGGTAAAGACATTACCATCTTACATCT 4113 36 100.0 30 .................................... TTGAAATCAATCACATAGCATTTTCCATCG 4047 36 100.0 31 .................................... AAGGCGGGTTTGTAGTATATGCGGATGGTAA 3980 36 100.0 30 .................................... ACTTCTCAAAAATGAGAAACGAGCAATCGG 3914 36 100.0 30 .................................... CGGCGCTCATGCAGACAACTAATAGTCACG 3848 36 100.0 30 .................................... GGGGATATGTCAGTCAATCCGCTATGTACA 3782 36 100.0 30 .................................... ATCAAGTTGTTGATGCTGTCGTTGGCACAA 3716 36 100.0 30 .................................... AAGCGATAAATTCATCTTGTTGCTGTGTCT 3650 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCCAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGATAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAACCCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACCGAAAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCGCGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 268165-266986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNO010000012.1 Listeria monocytogenes strain F6214 NODE_4_length_394521_cov_61.1562_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 268164 29 100.0 35 ............................. ATGATTTTGGACGCAGGTATTAAAATTCTGATGGC 268100 29 100.0 35 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAG 268036 29 100.0 34 ............................. TTGTTATGATATACACCTGTTTGCGGTCTTCTAA 267973 29 100.0 36 ............................. GTTGTTTCAAAATCTAGTACTACATAACTCATTTAT 267908 29 100.0 35 ............................. TGTGTAGCTTCTAATTCTGCAAAGTGTTGTTGAAT 267844 29 100.0 36 ............................. ATCATTGCTACAGCATCGAATAGCTACAGCATCAAT 267779 29 86.2 24 ........................C.CTC CTACGCTTTTCTTATTTTTGTAAA Deletion [267727] 267726 29 100.0 36 ............................. TTTTGTTAGTTGATTGCACCGCACCTTTAGCGCCAG 267661 29 100.0 36 ............................. AAGATAATAGTAAGTTTGCATTATCTTGTTGCGTTT 267596 29 100.0 38 ............................. TTCGTCTTTATATTTTTTGAACATAAGTAGCCACTCTG 267529 29 100.0 36 ............................. ACGCTCTCTGCGAGCTTTTGAGTTACCTTAGCCAGT 267464 29 100.0 36 ............................. GTGCTACCTGTGGCCGGGTTTATTGTAGAGTAATTC 267399 29 100.0 38 ............................. ATGGCAAGCGCATCTGTACCTGTTTTTGCTAGTTTAGC 267332 29 100.0 35 ............................. AGATTCAGGAATAGCAGAATGGCGATACGAAGATG 267268 29 100.0 34 ............................. CATAAAATTCTGCCACCGGGAAAAAGTCGCTATC 267205 29 100.0 34 ............................. TCACTCGCTTTTCTTCGAGTTCACTTAAAACCTT 267142 29 100.0 35 ............................. GCCTCATCAATACTTTTCATCATCCCATTAACTGA 267078 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGATAG 267015 29 93.1 0 .......................C....C | A [266990] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.9 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : TTCCTCTTAAAATTCAAACCCAAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTTGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCTGCGAAAAACAATCCCCACACAAGACCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATACATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTGAAAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 284360-283747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNO010000012.1 Listeria monocytogenes strain F6214 NODE_4_length_394521_cov_61.1562_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 284359 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 284292 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCCATTTT 284226 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 284161 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 284095 29 100.0 34 ............................. ACAACATGGAATGACGAAAGATTTGTATATCCTG 284032 29 100.0 35 ............................. AATTTTTTCCGCGAAAAAGTGAAAGCATATTTAGA 283968 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 283904 29 93.1 35 ..........T...T.............. TACTTTGAAATATCTAAAGCTATCTCACTGTTTAG 283840 29 96.6 36 ..............T.............. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 283775 29 72.4 0 T.....A.......TCA.AG...A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 95.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAATCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCTTCATATAAACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCACTAGTTTTAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //