Array 1 52510-51749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000035.1 Streptomyces toyocaensis strain NRRL 15009 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52509 29 100.0 32 ............................. CAGTGGAAACGGGGCAGGGCCCGCACCACCGA 52448 29 100.0 32 ............................. GGATCACCGCAGGTCGCACCCACTTCCGGCAA 52387 29 100.0 32 ............................. TCTTGACCGCCTCCTTCAGATTCGCCGAGTAG 52326 29 100.0 32 ............................. CTGACCCAGCTCGCCGCGTTCGGAAAGGGCTT 52265 29 100.0 32 ............................. CGCTAGGTGTCACGAAGCCGGTTCCCAGCTCA 52204 29 100.0 32 ............................. GCGTGCAAGAACGTGAGCATCGAGCGCTGCCG 52143 29 100.0 32 ............................. AGCTGCACCCTGGTGGCGGGCCGGTGGGATTC 52082 29 100.0 32 ............................. GGGTGAAAACTAACTCCCGAGTCAGGAGAAAA 52021 29 100.0 32 ............................. GGGGAGACCGCCCCGTTTGATCCATTGGCCAG 51960 29 96.6 32 .........................C... GCGTTCACGCCCGGGACCGGGTCGGTTGCCGA 51899 29 100.0 32 ............................. TCCTCACGCTCGGGGTCTTCCAGCCGCACGGT 51838 29 100.0 32 ............................. GAGCCGTGGAAGCGGGCGGGAATCCCGCCGAA 51777 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTCAACTACGACGGCCCCGACGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCCTACGAGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCAGGCGTGTTCGTGGGCAACCCTTCGGCCCGCATTCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCAGGGCAGGGCCGCGCGTTGCTGGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAGGGCGTCACCCTGATCCGCCGCCCCGACCCGAACGCGCCCTCCCCCGGGCCTGCTCTCCAACAGAGTCCCCCCTCTGGCTGGAGCAGGGCTGCAAAACGCCGACGCTTCGGCAGAGGCTGATGCACATGAAGCCCCTTACACCCCATATGCCGGGATCAGAGAAAGTACTCGCAAACCGCTGCTGGCCCGACTAAAACCGCAGGTCATCCAGT # Right flank : ATCGACATCGACGGGACCATCCAGGAGATAGGAACGGTCCTGGCCTGATGACGTCGGCCAGACCTGGAGCCTAAGGTGTGCCGGTGATCTTCAAGAGGAAGCGAGAGCCTTCGGGCCTCGCCGCCATCGTGTCCGAGCTGGAGGAGGCGGTTGCCGCTCGCGATGGCGATCGCACCGGGCGGGCCTTCAACGCCGTAATCAAGGGTGTGCAGTCGGCGTCGGATACTGAACGCGTTGTGGCAGGTCCCCGGTTGGCGGCCTTGCTCCCCGCCTTCCCACCCACGGGTCCGCGGCCGATGCTGGCGATGGCGGCCGGCTTCTGCGTCGAGCGCGGGGCGGATCCGGCGGCCTGCGCCGAGCCGATCCTCGACGGCGTCCACCGGGACCTGCTCGACGCCCGGGAGTTCGCCCACCGCTGGACTGCCACCGGCGCGGCCGAGGACGAACTTCCGAGGCCGAACGAAGAGATCATTGACGACGCGCTGCTGGCCCGTCTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62232-63294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000035.1 Streptomyces toyocaensis strain NRRL 15009 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62232 29 96.6 32 ............................G ACGGTCAGACGGTCTACCTTGCTCTCGGGGAG 62293 29 100.0 32 ............................. GGGGGCCGGCCACGGGGCGACTTTCCTACGGC 62354 29 100.0 32 ............................. ATGTCGCTCTCGTCGGCCGCCCGGCTCCTGAT 62415 29 100.0 32 ............................. GAACCAGCACCCCTCTACACATTGCACTGCCA 62476 29 100.0 32 ............................. ACCGGCAACACCAGCGCCGGGGTCCAACTCCG 62537 29 100.0 32 ............................. TGCACGCCGGGAGAACCCTGGAACGTGGCTGT 62598 29 100.0 32 ............................. GGGCCGGCGCTGCGGGCGGAGGCGGGTGACGG 62659 29 100.0 32 ............................. AGGTCCAGGTTCGTGACGGCGGCCAGGCCGTC 62720 29 100.0 32 ............................. CACGACAACGTCCTCGAGACGAAGTACGGGAA 62781 29 100.0 32 ............................. CCCCGTAACGGGCGCCCCTACCGCCGCCTCGT 62842 29 100.0 32 ............................. TGACCCCGCGTGAGCGCGGCCTGTTCCACGAC 62903 29 100.0 32 ............................. AGCTGCACCTCGCGGATGATGCGCAGCTCGGC 62964 29 100.0 32 ............................. GGCAAGGGCGGGATCATCGAGGCCCGCGAGCT 63025 29 100.0 32 ............................. TCGTACGGATTGAGCGTCTGCGTGGACGTCGA 63086 29 100.0 32 ............................. CTCAAGATCCTCATGGAGGCCCAGCGCAACCA 63147 29 100.0 32 ............................. GGGCCACGGCCGGACCGACGTAGCCGCCCACG 63208 29 100.0 32 ............................. CACCTGAGGCGCGTTGCCCAGGAACCGGCGCT 63269 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCGGAGTGGCCTTGCCGATGTCATGCACTCCGGCGAGCCATACGGCGAGAGCACGTGCGTCCGGCTCGCCCTGCGGCAACGCCTCGGCGACCAGTCTCCGTACCCCCACGGGAAGCCACTGGTCCCATAACAGGCCGGCCACCGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAACCAACCGTCGCTGTCACGATCGTGCTTGGCCCACACGGACCGAGCCGACTCCCCGAGCCGACCCAACAGATCCGGACGAGCACTCCCCCCAACGCTCATGAGGGATTAGTACAGGGAAAGCTCGGCTCCGTAGGCGAATATGAGCAGATAGATCTGTTCGCAGAAAAACAGCATCCCCAAGACGTACGATGATCGGCTCGCCCTTGATCCGGTCAGAAGCATCCTGCGAGATCGAATACTGTTATATGTGCCATTTGTCGGAATCTGTAAAAGTTACTAAAAGCACGCGACAGCAGCAGTAAACATGCAGGTCAAACAGT # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5419-6423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000051.1 Streptomyces toyocaensis strain NRRL 15009 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5419 29 100.0 32 ............................. GAACTAGGTTGCCTCGGGCAACTAAATGGGAA 5480 29 100.0 32 ............................. GACGACCGGTCCGACCACACCGGCATCAGGAT 5541 29 100.0 32 ............................. CTGGTCGCCCAGCGCCCGTACCCTGATGATCA 5602 29 100.0 32 ............................. TGGCGGGCGCTGGGCCAGGCTTTCACTCGGAC 5663 29 100.0 32 ............................. CCGCTCGTCGGGTCGCTGCCCTGCTTGTAGAA 5724 29 100.0 32 ............................. GTCGCGATCCCCGCCGCGGTCTGAGCCGTGGC 5785 29 100.0 32 ............................. GCGTCCATGGACGCTGTCCGAAGGGTTTTCCA 5846 29 100.0 32 ............................. CGGGTCAGCTCCGGGTGCGGGTCCTCGAGGAG 5907 29 100.0 32 ............................. GATCTGGGTCTGGCGTTCGAGCGGGTCATCGA 5968 29 100.0 32 ............................. GGGAGAACGCCATCGCGGAGACGATGGAGCAG 6029 29 100.0 32 ............................. CGCCACGCCCGACCCACCGCCGAATGCCCCAC 6090 29 100.0 32 ............................. GCCAGCCGGCCCCCCCAGATACCGTCCGGCTC 6151 29 100.0 32 ............................. GCCAGCCGGCCCCCCCAGATACCGTCCGGCTC 6212 29 100.0 32 ............................. GGCGAGGATGGCCTTGCAGGTGGTGAGGTCTT 6273 29 100.0 32 ............................. GGCGCGCACGTCGGCGCGAGGGCGTCCAAGGT 6334 29 100.0 32 ............................. GTGCGGGCCCCGTCAGGGCCGGCGTCCACGGC 6395 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCACCAGGAGTGGGTGCCGGCCTTGCTGCAGAAGCGGCAGCGGCGGCTCCTGGGGCTGCTGGCCGACGAATGGGATCTGTAAGGGGCGAAGCCCTCTGCCACGGGTGCCATCGGGCGACGCGAAGGGGTTCCGGTTGTCGAAGCGGTAAGCACCGTCGCCGTTTTCCTGATGCTGCGGCAGGCAGGGTGCCGGAGGCGAAGGCGCCAGCCGTGGCTGCGTCCAGCTGCTGGGGGAAGGCAGGACGCCGACGATTGCCCACACCCGCCGGGGCCATTACAGAAGTTGAAGCCGGGGTGGGAGGAGACCAACGACCGCTGGTAATGCGCAGCGTCCCCCACCGTGGTTCCCGGTCGCGCAGCGGTCCCGCTGGTTCACCCGACAGTTGTAGCGTGGTTTGCTGCACTTCAAAACCGGAGCCACGGATATGTGTTATTTGTCGGAATCGGCGAAAGTCGCCGAAACGATGCTTGGCCCGGGATAAAACCGCAGCTCAGCAAGT # Right flank : CGCGGCAGTGACAGGCCGGCCAGCACCGCCCGCAGCCGACCGACGTCGATCCGGCCCCGGTTCAGGCCGCCGTACATCGCTCCGTGCCCACGACGATGCTCGGGCAACAGCGTCAGATCCACCGGGGACTTCACCGCACCGTCCGCACACAACACCGCGTCCATCAGCTCGAACAACTCATCGCGCCGAGCGGTCAGGCACTCGTAGAACTCGCCCCGGAATCGTGACGCCTCCGCGAACGCTTCCCTCCGGACGGCATCAGGCAGCAGACTCACCCTCACGGCCTTCGTCTTGGTCAGTGCACCTTGGTCGGAGCACTGACCAAGACGAGGCCGCCCCCACATCCGGCGAATCCCCAGGTGAGCGACTCAGTTCGAGATACCGTTCGAGGCCGGAAGAAAAAGAACAAGCTCAGGTGGATCTGATGGTCAGGCCGGTCTCGGCTAGGCAGCCGTCTATGAGGTCGCTGCGGTACTGAATGTGCCGCAGGCCGCGACGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000057.1 Streptomyces toyocaensis strain NRRL 15009 contig00057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. ATCCACAAGCTCGCGGAGGTGTACGGAGTCCC 108 29 100.0 32 ............................. ACGGTGCTTGTGCTGCGGCATGTCTGAAGACT 169 29 100.0 32 ............................. GATGCCCCTGAACGGTAGATCCGGTAGAGGCC 230 29 100.0 32 ............................. ACGAGGGCGTACTGGTCGGACTGCCGGGAGGC 291 29 100.0 12 ............................. CCTCCACTACGG Deletion [332] 332 29 100.0 32 ............................. GTATCGACGCGTAGCCCGAGATGCCGACCTGT 393 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 29 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGGGATGGTCCCCACATCCGATAGGAAGCGAGGAACCGACCATGC # Right flank : CTGACGGATCCTCCCGTCGCGGTGGCAGAGGGCGAGTGCGAGCCGAGACTCGCCGAGTTGAGTCAGGTCGGCGGGCAGTGGGGCGAAGTGCTCCCACTCCGGCAGGAACTTTGGGCGGTGCCAGGCCACGTCACGCACTCCTGCGTCCAGCGCGAGCCAGTCAGCGGGGTCGGCGACATCCAGCGTGCTGAAAAGCGGCGTACCTCCCGCGAGCCGTGTTGCTGCCGCTGTCCCGTCCTCGATGTCCTCAAGCATTCCCGCCCCTCCAACAGTCGTGCCAGGTGATCGTAGGGGCGGAGTTCGCGTAGGGCGCGCGAAATATGGGCTGTGTTTGCTACGGGCCGCCGTTTGGCACCCTGTCCACCAGAAGCCGAACGCGGTGACATCGCCCCTGCTTCGCTTGCCGCCGGTGACAGGTAGCGCGCCGCATCGGTGACCACCACCATGCTTTGTCCCACTGAAGCCGCAGGCCGGCGGATGCCGGTGGTGAGAACTATCGT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-1532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000043.1 Streptomyces toyocaensis strain NRRL 15009 contig00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 39 33 93.9 28 .............................C.A. TAGGTAGGAGAGGCGGTGCGCTGCTCGC 100 33 100.0 28 ................................. ACTCGTGACCGGGCAGTTCGGTCCCTGC 161 32 93.9 29 .............................-..C CTCAGCGCCGGGCGCGGTATGCGGGTGCG 222 33 97.0 28 ................................A TCAGCCGGAGCAGCGCGGCCACGTGTAT 283 33 93.9 28 .............................A..T TTGCGGTGTTCGTCTCCACGCCGCCCAG 344 33 97.0 28 .............................A... TGATTCCCTCATTGCGCTGGGCCTCACC 405 31 93.9 29 .....................-.......-... TCCAGGTCCCACGACGTCGGGTCGAAGCC 465 33 90.9 28 ................G............T..C CGCCCTTGTCGGCGCCCTTCTGGAACCC 526 33 90.9 28 ...A...........................CC GCACGGAGTGGGAGCGGGCCTGGCGGCA 587 33 90.9 28 .............................CTC. GCGACGCCCTCACCGACACCCCGGCCTG 648 33 90.9 29 ..............................ACC ACTGCTACGGGCTCGTCCGCGCCACCAGC 710 33 84.8 28 .....................C......AA.CT TCCGGGAAGGTCGTTGCCGAGAACACCA 771 32 87.9 28 ........TA.......-..............C GCGAGATGATAGAAGGCGTGTTGTCCGG 831 31 75.8 28 .....A..T.....--........C....TTC. CCATGCGCGAGAACGTGGTGCTGGAGGT 890 33 87.9 28 ................T............CG.A TCCGCTCCGAGGGCCGCCTGCGCGTCAC 951 33 84.8 28 ............C...............AC.CT GTTTCCGGATCCCGTGCCCAGACCCGGT 1012 33 84.8 27 .......T........T...A.......A..A. GTCGATCGCGGACAGTTCGGTGGCGAG C [1041] 1073 33 90.9 28 .............................TA.T CCCCGGTGATGATGTTCGGTCCCGGGCG 1134 33 87.9 28 ................T............A.CT TCGCCAGCTCGGCGGCACCACTGCCGTG 1195 32 87.9 28 .....-.......................CAC. TATTCTCTGTCGTCGCTGCGGTCATTCT 1255 33 90.9 29 .............................TG.T CTGTCGTGGAGGCCGATGATGTGAAGCAG 1317 33 93.9 28 .....................A.........T. GGGGTCCACCAGGCCCTGCGAGGGGTTC 1378 33 87.9 28 ..................T..........CG.A GGAGCACCGGCTCCCGCCGCTGTGCTGG 1439 33 93.9 28 ......T....T..................... CGACCTGTTCGGGGGTGCTCGTGATGCC 1500 33 93.9 0 ..............................A.A | ========== ====== ====== ====== ================================= ============================= ================== 25 33 90.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGG # Left flank : GTTCCGGCCCCGCCATGAGCCTCATGACGCCCGAGACGG # Right flank : ATGACTATGTGTTCCGTCTGAACGTCCCCGCCCACCTCGCCTCCTACGCCGGCCTCGCTCCCGCCACCCGCAGCTCGGGCTCCTCGATCCACGGCGAACAACCCTCCCGCCGCGGAAACAAGCAGCTCAAACGGGCCTTCTTCCTCTCCGCGTTCGCCGCCCTGGCCGACCCGGCCTCCCGCACCTACTACGACAAGAAGATCAGCCAGGGCAAGCACCACACCCAAGCCCTCCTCTGCCTCGCCCGGCGCCGGGCCGACGTCCTCTTCGCCATGCTCCGCGACGGCACCTTTTACGAGCCGCAGCCAGCAGCGGTCACATGACCTACGGGCCGGCCAGCAGCAGCACACGGTCGGCCTCGACGCCGAAGCCTAAAACCGGGTGGAGCGGATCGGACTCCGGGCTCAGCAACACCGGCTTGCCGAGCCGACGCCCGATTACCCGCAGCAGACGACACAGCACATTCATGCCGTACTGCCCCTGCAACTCCCGCAGATCAA # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 2539-3723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000043.1 Streptomyces toyocaensis strain NRRL 15009 contig00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2539 28 96.4 33 G........................... GACGAGGGCGAGTTCTACACGTACAGGGACGGA A [2555] 2601 28 82.1 33 C.....T.........A..A...C.... CGGCGGTCAGTGCGGATCAAGGGAGGCGACCGG 2662 28 96.4 32 ...............T............ GCGATCCAGTCGGCGACATGCTCGGCGTAGCC 2722 27 89.3 33 ................-.....AA.... CAGTCCGGGCGACGGCCCAGGTTCTTCCCGCCG 2782 28 89.3 33 .T.....T...A................ TAGTCGCGGTGGTTGTGCTCGCTCAGGCAGCGG 2843 28 92.9 33 ........A................T.. CCGGTCCGCGAGCTCACTGTCCGCACCGTGGAG 2904 28 96.4 33 .............T.............. GCCCTCGCGGCGTACCCTGTGCCGGTCGCCGTG 2965 28 100.0 33 ............................ TACGCGGAGGACTGGGACCTTCTGCACTCCGTG 3026 27 96.4 33 ....-....................... GCGCACGACCCGACCACCGGCCGGGCCGTCGGG 3086 28 96.4 33 ................A........... AACTCTGCCTCAGCCTCGACCTGGTGGTGCGCG 3147 28 96.4 34 ......................A..... CAGCAGGCCGAGGCATTGGCGGAGGTGGCGCGGG 3209 27 82.1 33 C...T.....T.G...-........... TCGAAGCGTTCGGGGACGAACTGCGGGCCCGGG 3269 28 96.4 33 ................A........... CTGCGGTACGGCCTGCCCGTCGCGTCGTCCATG 3330 28 100.0 33 ............................ CCCGCTCCCGGAAGAAGTTGCGGCCTGGCTCGG 3391 28 96.4 33 ........A................... GTGATCGGGGAGGCGCCGCCGGGGTACGTCGTA 3452 28 100.0 33 ............................ CAGGCCAAGGACGGGTGGATGACGCCCGCGCAG 3513 28 100.0 33 ............................ GCGGCCGGGACCCTCGCGCCCTACATGTGGCGG 3574 28 100.0 33 ............................ TCGACATAGGTGGACGTCACGTTGAGGGGCGGG 3635 28 96.4 33 G........................... GAGATGTGACGTCATGGCGCTCTGTCCGACCTG 3696 28 82.1 0 ...........AC...C.C...C..... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 94.3 33 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : GTCGATCGAGCCAGTCTCATACGGACGAAAGATCACCAGGAATCCAGGAACCGGCCAGACCCTCAGCACCACGTCGGCGCCCTCACCACGGGCCAGCATCTCCGCAGCCCTCGGCAGCCGGGCCACAGCACCGTCCTCGGAGTACTCGCACGACCACCCCTGCGACCGAACGAGATCAAGCACCGCCTGCCAGTCCTCCACCGAGGTATCCGGGACACGGACGTCCGGCAGCGACCCCATCAACTCGGGAGCAAAGAAGCTCTTGACGTCATCCCATAGCAGGTCAGGCATCACGCCATGCTGCCTTGCCACTCACCGAAACGCAGCCCGATTCCCTTGACGAGACCCATAGGGGCACCCCCCCACACACACCACGACCCCGAGCCACAACCGGCCGATAGAGTCACAACCAGCGATCCCCGCACCGCCCGCACCTTGACTCAACAACACACCAAAACCACACCCGCCAACTGCCCCTTACGCACTACTCCGACAACACC # Right flank : GCCGGTACACGCTGAAGCCGGTGGGAGAGCCGTACGACTCCACCGTCGCCTACATCGAAGCCCACTACCTCGTCGACTGACGAACGCACGACGGCCCGGCAACCTGTGACGGTTGCCGGGCCCTCGCTCTGCTCGGGTCATACTCTCAGGGCCGCTTAGCTCCTCTACATAGGCTGCATGAGCCATCATGTGACGCACCTACCGTCACCTCGCAGCGGGGACATTGCGACGGGTAGAGCTGGTTTGCCAGTGATGCCACGACATGCCGCATGAGTTCTCGAGGGCAGTGATTGGGGCATCCGCCCCAATCACTGCCTAGATCACTGAGCCGCACCCGGAAAAGGACTCCGCAGAGAGCACAGCAGACAGTCCATGCAGCGGTAGCACTGCGGAACGGTTCCACCGCCTCAAGCTCATACTTCACGAGCTCCGCCTCAGCTTCGCGAGCTGCCAGCTTCCGGGCCGGGATGACAGCAGGTTCGTGCCGCTCCTCGGCCCGC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000077.1 Streptomyces toyocaensis strain NRRL 15009 contig00078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1 17 48.5 28 ----------------..............A.. CGGCCGGGGTGCCGGCCGGGAGGACGGT 46 33 90.9 28 .........T....................C.G GGTGACCAACCGGCCCTCCTGTGACGCC 107 32 84.8 28 .................-...........CCGA TCCTGCGATCTTGTCGATCAGCGGCTTC 167 33 100.0 25 ................................. AGCAGCCCTGCCACCGTACGGCCGG 225 32 93.9 0 .................-...........C... | ========== ====== ====== ====== ================================= ============================ ================== 5 33 83.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCC # Left flank : | # Right flank : CCGCGTAGGCCCGGTACGTGGCCCGAT # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.05, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3467-3191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000060.1 Streptomyces toyocaensis strain NRRL 15009 contig00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 3466 33 97.0 26 ..............................T.. GCGGGGAGGCTGCGGAGATCGACACC GC [3438] 3405 32 90.9 28 .................-............GT. GGCACGGTGGGGCCCTCCTTACTTGGTG 3345 33 100.0 28 ................................. TGCAGATTGCTTCGGATGCGGCGGCAGA 3284 33 81.8 28 ............A..A..A..........T.GA GCGGGCGCAGCTTCAGTAGCAGCGCCAG 3223 32 72.7 0 ..............-..A.C..A.A..GAC.T. | T [3204] ========== ====== ====== ====== ================================= ============================ ================== 5 33 88.5 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCG # Left flank : CCGCCGCCGTGCGGCATCACCTGGTGCGCTATGACGGCACCGCCACCGTCACCGCCCCTGACGCCCTGGCCGAGGCCGTACTGACCGGCATCGGACGGGCCAAGTCCTACGGCGCCGGCCTGCTCAGCCTCGCCCCCGCGTGAGCGCGTCACAGGTGGGGCGGTGAGGCGCGTAGGCGTCTGGCCGCCCTCACCCTGGCCATGCTCCCGCGCGTCGCGGACTCCCTGTCCTTCCTCTACCTGGACATGGTCCGCGTGGTACAGGACGACACCGGAGTGTGCGCGCAGATCCAGGTCGATGACCACCGCACAGACCTCGTCTACCTCCCCACCGCAGCCCTGTCCTGCCTCCTGCTGGGCCCGGGCGTCTCCATCACCAGGCCCTGACCACCCTCGCCCGCCACAACACCAGCGTCATCTGCGTCGGAGCCGGCGGCGTCCGCGCCTACGCCGGCATCCTCCCGTTCCGGCGATCGTGTCCGGCATCGCCGCAGGCTCTGC # Right flank : TAGCAGTCGCGATGAAGTGGTCGGCACCCTCAGTCCGCCCGAAGGCGGGTGGCACGGGTGCCGACCCCCAAGACACCGCCCGAAGGGCATGTGCTCGGGCAGCATCCTACCCGCCGCTCTCTACCGGTAGGGAAGTTCGGTACTGTTTTCTTGACGGGTCCGGTGTTCGCCGGACCGTGGGAGGAACCCATGATCCGCGCTGGTCGCCGACACCTGGTGCGCACCCTCGCCGACATCGCTACGCAGCAGGGTATTGCCGTGCAAACCCTGATCAACTCGGGCCGCCTCAAGGCCGAGGGGTTCCCCGCTCCGCTGGGCGCGGGCCGCATCCGGCTCTACGACGGCGAGCAGGTCGACGCCTACCTTGCCGGGCGTCCCGTTCCGGCGCTGCCGACGGCGGACGATGACGATGACCTGCTGGACCGACAGGAGGCTGCCGCGCTGCGCGGAATGGACCCGCAGGCATGGGACCGCCGGAAGAAGGATCCGGCCGTGCGCGA # Questionable array : NO Score: 3.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:-0.06, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12361-13519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFCB01000060.1 Streptomyces toyocaensis strain NRRL 15009 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================================================================================================================================== ================== 12361 33 93.9 28 ..................A...........G.. GCGCGGGTGTACGAGAGGAGGCCCTCCC 12422 33 87.9 28 .............................AACG GCGCCGTGGAACGGGCCACGTCCCTAGT 12483 33 100.0 28 ................................. GCCGGGTGAGCACGCCGCCTCGCGGGCC 12544 33 87.9 28 ........A.....................CCC GGTGTCGGCAGGCGCGGCCGGCAGCTCC 12605 33 93.9 28 .............................CA.. CGAGCGTGCGGCGCATGTACAACTCCGG 12666 33 93.9 27 .......................C.....A... AGTTGGCGTCCTTGGGGCCGGTGTCGG C [12671] 12727 33 72.7 119 ................GA...C.CCGT...C.A CGCGATGCGAACGCGGTTTCAGACGTCGTCCTTGCCGACGCGGTGGCCCCGATCAGGCAGGATGGTGCCCGTGACGCTGCCTCTCTTCGCCGACGCGAAGGTGCGCGGTACCGGTCGCC A [12753] 12880 33 84.8 150 ...G..T.......T....A....C........ GAATCTCGTCGACGAAGAGGTAGTCGATGTCGTGTGCGCCGACGCTAAGGTGTCCCGCCTCAACAAAGTGTGGCCGATCGCGTGTTTGAATCCTCCCCGCCGACGCGGGCGTGTTCCGGCTGGTCTCTCCTCGGTGCCGATGGGGGTGCA 13063 33 90.9 28 ........................C....C..A AACTGTTCGGCACGGACGCGCTGCCGGT 13124 33 87.9 28 .............................GCCA CCGGGGAACTCACCCGCGGCTTCGGCAA 13185 32 81.8 28 ...........T....T.....-......CG.A CGGTAATCGTGCCGCCTGCGTTGGAGTC 13245 32 81.8 28 .....-........T..............GCCG AGATCCTCGGCTACCTCCGCGAGCGCTG 13305 33 90.9 28 .............................CC.C TCGGCTGGTGACCCTACCTCATCCTCGG 13366 33 93.9 28 ..............T...............C.. GGACGTTGCCGTCGTCGTCGATGCCGGC 13427 33 90.9 28 .........................C....AC. CCAGCGTCGACCGCGGTGAGGGCCGCAA 13488 32 84.8 0 .......T.....................-ACG | ========== ====== ====== ====== ================================= ====================================================================================================================================================== ================== 16 33 88.6 42 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTTGT # Left flank : ACGACGACTACGCCGAGACGAACGCACGACCCTCCCGAGGGATGTGGCGCGACCTCGGCCCAGTCTGCGCTCTGGAGATGCAGTGTCCCGGTTCCTGCACAAGTTCGTCCTGCGTCGCGAAGTACTTCTCGGTACCTCACGCGTAGTGGTCAGCGCGGTAATCCGTGCTCTGACCAGCGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGTGACGGACCCCAGGGGTCCGTCACCTCTTACATGCAGACGATCCCCGCTGACCGAACACGTTCTGCGCAACCGGGCTACACCGCAGAACCAGATGTCCGACTACAAGCGGATGATGCCGACACTCCACACGAGCGCAGGCAACCCCACCGTCACTGCTGCACCGGACGACACGCGTCGCCTCGACCGTGCCGACGATCAGGGCCTGGACATGCAGCAAACCCCAACAGCACACCCCTGTCCCCCCTCGACAAGCTGGCCAAATGACCGCCCCTCCGACGTTCATCGTGAT # Right flank : TCCGGGCTGGTCTCACACCGCCCGCCGCAGTCCTCC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:-0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //