Array 1 95663-97215 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWJ01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5200 NODE_6_length_143729_cov_83.471072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95663 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 95724 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 95785 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 95846 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 95907 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 95968 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 96029 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 96090 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 96151 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 96212 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 96273 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 96334 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 96395 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 96456 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 96517 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 96578 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 96639 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 96700 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 96761 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 96822 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 96883 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 96944 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 97005 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 97066 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 97127 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 97188 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113530-114047 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWJ01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5200 NODE_6_length_143729_cov_83.471072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113530 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 113591 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 113652 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 113713 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 113774 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 113835 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 113896 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 113957 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 114018 29 93.1 0 ............TC............... | A [114045] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //