Array 1 64-1177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIX01000042.1 Bifidobacterium bifidum strain DS32_23 DS32_3_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 64 33 100.0 36 ................................. ACAGCACGGCATCGAATTCGCCGCATTCGTTTTCAC 133 33 100.0 37 ................................. TCGCTGACCCCGGCGACGGGTGATGTCAAGGCGGGTG 203 33 100.0 36 ................................. CGGTACGTCGATCTGTTGCAACAGCAGGGCAGCAGG 272 33 100.0 36 ................................. CTCGTTGGCACGTTGGGCGCTGCGTGGGGGTGGCCG 341 33 100.0 36 ................................. TTCGTGATCGTGCGGCGGTCGAGCCCGGTCTTGCGG 410 33 100.0 36 ................................. CGCGATGATGACACGCGTGATGCGTGGTTTGACGAA 479 33 100.0 34 ................................. CCGTACGTCAACGCGATAAGCCAACGTTTCTCGA 546 33 100.0 34 ................................. GCTGCATCATCATTTGCGTGGGGGGCATGAGTGC 613 33 100.0 35 ................................. GGTTACTACATCGTTGAGCGTGCTGAGGTCGAGTG 681 33 100.0 35 ................................. ACGGGCGCACAGGATGCGGACGGTTTGGGTGGCGG 749 33 100.0 33 ................................. GATCTCTCCCGCATTATATCGCCAATAGTCGGA 815 33 100.0 34 ................................. ACTCGATCGTGTATGGCGCGCCTGTTTGCGGGTC 882 33 100.0 33 ................................. TTTGTGGTTTCTGCTGTTTCGGCGGTGGTGTTT 948 33 100.0 34 ................................. GATGACGGCACTGCGAACGCACGCCACGGCCATG 1015 33 100.0 32 ................................. TCGTAATGCTTTGGATGGTTGACACTGTCCAT 1080 33 100.0 32 ................................. GCGGGCAGGCGAGTCCAGCCGCGACGGGTCAG 1145 33 97.0 0 .......T......................... | ========== ====== ====== ====== ================================= ===================================== ================== 17 33 99.8 35 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GCACCCCTCCCGGGGGGCGTGGATTGAAATTTTGTTGTAACCACACGTACACGCGAAATGGTCG # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTTATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGACAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGCGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATGTGATAGACTGCCTACGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1090-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIX01000060.1 Bifidobacterium bifidum strain DS32_23 DS32_3_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1089 33 100.0 34 ................................. CGTGGTCCCGTGTGGTTCAGAGGTTCCTGATTCG 1022 33 100.0 36 ................................. GGTGTGTCTCCTCATGCTTACGCGTATTTTTGAAGC 953 33 100.0 35 ................................. CTCGGGTTCGTCCACGCTCGCGTCAACCGGCGAAT 885 33 100.0 34 ................................. ACATCGTCCTCGTCGCGCTCGAACCTGATCTCGA 818 33 100.0 34 ................................. TCGCCATTATGGATATACCCAATGCGCACATGGC 751 33 100.0 34 ................................. AGTTATGGTTATTTGGTTTTAACGACTGACCTTT 684 33 100.0 34 ................................. TTATCGGCGAGCGCGGCGTTTTTTTCCGCACGCT 617 33 100.0 34 ................................. AAACAGAATCGCTGAGATGGCAGTCGATGGACTG 550 33 100.0 35 ................................. TCCCCACAAAGTTCTTGAGCGTGCGGAAAAAAACG 482 33 100.0 34 ................................. ATCGTAGGTGGTGTGTATTATGCCCAGAGCCCGC 415 33 100.0 33 ................................. GGCTTGCAATGGCTAGGCGGGAAAACATGTCTA 349 33 100.0 33 ................................. TTTGATGAAACCACACGTACACGCGAAATTGTC 283 33 100.0 35 ................................. GCGGCGTGGGGTATAGCGATATGCCCACGGTCGAA 215 33 100.0 33 ................................. AAGCGACGTGTTAACAATACGCTCGCACGCGAT 149 33 100.0 35 ................................. TGAGCCTCCTGTGTCTGTGGTTCCGGTTGCGGTGC 81 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGCA # Right flank : TTCGGCCATCTCCTTGACGTGCATGCCCAGGTCGTCGCACCCCTCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //