Array 1 43916-44859 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHL01000015.1 Escherichia coli strain 3432 NODE_15_length_109141_cov_143.02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43916 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 43977 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 44038 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 44099 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 44160 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 44221 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 44282 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 44343 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 44404 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 44465 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 44526 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 44587 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44648 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44709 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44770 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44831 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70559-72600 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHL01000015.1 Escherichia coli strain 3432 NODE_15_length_109141_cov_143.02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70559 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 70620 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 70681 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 70742 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 70803 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 70864 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 70925 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 70986 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 71047 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 71108 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 71169 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 71230 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 71291 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 71352 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 71413 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 71474 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 71535 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 71596 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 71657 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 71718 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 71779 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 71840 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 71901 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 71962 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 72023 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 72084 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 72145 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 72206 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 72267 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 72328 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 72389 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 72450 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 72511 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 72572 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //