Array 1 45240-45474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJEG010000009.1 Streptococcus pyogenes strain NS10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45240 36 100.0 31 .................................... CCGGATATTGCAAACACAGCTGTAACGCTTT 45307 36 100.0 30 .................................... TGTTAAAGAAGTGACAACTTTAGACAACAA 45373 36 100.0 30 .................................... CGTACAAAAGCATCTAGTCCCTCTTTAATA 45439 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTAGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGACTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CCTATAGAGGCTCAGCGTTGTATGCGTCAATGTTTTAGAGCTATGAAAATCTTTTATTTATGATATAATGATTTGTGTGTAAATATGCGCTTCTACGGCGTGTATTTTTTTGTTTCCAAAATATTTTCTGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGGGAATTCAGTCGGGAAATATTATTGTCTAAAAAAGCTGAAAATGTGTCTGTAACTTGAACAGATAGTTCATCGTGTACCTGATTATATTTATCAGTCATATACATTTTTGTGTGGCCCAGTGCTTTACTGAGAGCTTCCATGGGAACCCCAGCAATTATGCTTTGAGTGGTAAAAAAGTGTCGCATCATGTGAGGGGTGACACGAAAACCAACACTCTCATTAACTTTCTCAAATTCATCATTGAGTTTGTTTGGATTAATGAGATTACCGTCTTCCTTAATGCTTATATAATCCCATTCTTTGTCTTTGATGATGGAAAGTCGTTTTTTGATAGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 3510-3677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJEG010000019.1 Streptococcus pyogenes strain NS10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3510 36 94.4 30 ....AC.............................. AATCTGCGTTAGATTTGTTTTGGTGTAAGG 3576 36 100.0 30 .................................... AACAAAAAGACGTCCATGTGAACGCCTCCT 3642 36 86.1 0 .......................G.....T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 93.5 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : TTGATACAATTATATATTATTTTATTTCACAAATAAAGTTTTTGGGCGAAAAAATCACTATATCTTGTGTCCTCAAACAAAATTATATACAATTTGTTGTATTTTGAATAAAAACCAACCGCTCAGATAATTTCTGGGCGGTTTTTTTGTGTTTCACACACATTGGCATATCCGTTATAACGGACTTGTTAAAATTAGTCCATTAAACCAGACTTTTTACGAATATATAAGTAGGAGGTGCTTATGCTAACATACGACGAATTTAAGCAAGCAATTGACAATGGATATATCACAGCAGACACAGTTATGATCGTGCGTAAAGACGGACAGATTTTTGATTATGTGTTGCCAGGAGAGGAAGTCAGGCCATGGGAGGTGTTGACAGAGGAAAAAGTGGAAGAAGTGATGAGGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTGATCCAATCTATTGATATAAAGCCTTTTTA # Right flank : CAATATTGCCAATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGAGGGGTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGACAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTA # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //