Array 1 11904-9756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYP01000008.1 Ligilactobacillus agilis DSM 20509 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11903 36 100.0 30 .................................... TTTTTCATAATAGAATCAGCAAAACCTAGG 11837 36 100.0 30 .................................... AATTATCCATGATTATCTTTTTAATATCGT 11771 36 100.0 30 .................................... GCAAATTTTACAATTAATTCTTTATCACAA 11705 36 100.0 30 .................................... AGATAAATCCATCAAAGGATTGACACTATT 11639 36 100.0 30 .................................... ACATCCAGCAAGAATTCTTGCTTCTGATGG 11573 36 100.0 30 .................................... AAGCGTTTCTTGTATTAAACCTTCATCATC 11507 36 100.0 30 .................................... ATAGAATCTAGATAAATATCACGCAGTTGT 11441 36 100.0 30 .................................... ATGCCAATTCTAACTGTGGATGTGTCATCA 11375 36 100.0 30 .................................... TTAGCTTCATCTAAAATCGCCACTGTTTCG 11309 36 100.0 30 .................................... TCACTTTAGTGAGGGGTAGCTGACTAATAG 11243 36 100.0 30 .................................... AAAAAATAATTGATGAAATCGCCGGCACGA 11177 36 100.0 30 .................................... TGCATGTGTTACCAGACCATGAAGGGTACT 11111 36 100.0 30 .................................... AAATTTTTATTACTTAAAAGGTCGATGATA 11045 36 100.0 30 .................................... GCAGCAATGGAAACTGCGTCGCTTGCAACC 10979 36 100.0 30 .................................... AACTATAACGAATATCCTTGCCAGCTAAGT 10913 36 100.0 30 .................................... CCTGCACTAACCATGCCACCAGCTACACTT 10847 36 100.0 30 .................................... TCATGATTTCCAAATTACTTTCTACATTTC 10781 36 100.0 30 .................................... CGTGCTCAGGTCGGATTTAAGCGAGGGAAT 10715 36 100.0 30 .................................... GTTCTTTTAGCCCTACAAACAGGAAAAAGG 10649 36 100.0 30 .................................... TTGGGTTCTGTTTATGGTTCCTTTTCAAAC 10583 36 100.0 30 .................................... CTGACATTGAGTCTTTTTGTACCAACTGTA 10517 36 100.0 30 .................................... TTTACATCATGTAGAGACTCAGTCGTAAAT 10451 36 100.0 30 .................................... CTGATATGCTACTATCACCGACAGTTACAT 10385 36 100.0 30 .................................... ATAAATAATTATATTATAGTTAAACATAAA 10319 36 100.0 30 .................................... TCACTTGCTAGAATATCGACTTTATGTTCT 10253 36 100.0 30 .................................... GAACCTTTGTCATAGGTTTGACTAACGCCG 10187 36 100.0 30 .................................... CTTTACCTGGCAAGTAATAGGTGAATTTCC 10121 36 100.0 30 .................................... GTGGAAATCATATTAAAGCAGGACAAAGTG 10055 36 100.0 30 .................................... TTACCGAATGGAGGATTTGGAAGATGATAA 9989 36 100.0 30 .................................... TAAAAACCGGGTTAGATTTTTTGTAAATAG 9923 36 100.0 30 .................................... TTAATTATCCCAACTAGTTTAACAGTCAAT 9857 36 100.0 30 .................................... TTCACCTTGTGAAGCCTGCTACTCGTCAAG 9791 36 94.4 0 ........................A..........G | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : TTAATCATGACTTAGATAAACGTTACAAGCTAGAGTTAGTTAATAAGATTACCGAGGGCTTGGCTCCGCACGTGAGGACAAGTATTGAAAAGAAGGCGCGCGAATTATTTACACTCTTGCAGGAAAGTTTGTTTATGACAGATATTCCTTTAGAAGTTAGTTTTGATGGGGATGTTAAACGGTTACTTAAATATGCTAACATCCACTTACATCCTTCTATATCTAATGATGCTTATGGTATAATTGAAAGTGATTTAAAACTTCATATTGAGTGTGATGATAAATCGTGTATTGTGTTCAATAACCTAGCTAGTTATATGACGCAAGAACAATTTCGTGAACTTCAGTATGTTAATAATGAAATTGGAACGAAAGTCCTTCTAATTGAATTTTCAGATTTGGATAAGAAGGATTATTATAAAAACTGTAATTATTACTATATTGATGCTGACTTCGTTGGTTGGTACTTCTAAAGATTAGATATTGATTAATAAATATCG # Right flank : TATAAAGTATCTGAATAGCTTGCCAACTTGGCCCTGTGGTAAAATGGGGGCAAGACTAAGTGAAGGTTGTGATCTTGTGAAACTTATTTCCTGGAATATTGATTCGTTGAATGCGGCGCTGACCGGCCAATCAGAGCGGGCAGAGCAAAGCCGGGCGGTGCTTGCTACCATTCAAGCCCAAGCACCGGATATTGTAGCTATTCAAGAAACCAAGTTGCCGGCTGGTGGTCCCAACAAGAAGCACGTTGAAGCGCTGGCTAAGTGGTTTGCGGACTATGATTTTGTTTGGCGCAGTTCGGTGGAACCGGCTCGGAAAGGCTATGCGGGGACGCTCTTTTTATACCGTAAGAGTTTAACCCCTAAGGTAACCTATCCTGAAATCGGGGCGCCTAGTCCGATGGATCAAGAAGGCCGGATTATTACCTTGGAGTTTCCTAAATTTTATGTTAGCCAGGTTTATACACCGAATGCGGGGGATGGACTTAAGCGCTTGGCCGAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 186383-184215 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYP01000072.1 Ligilactobacillus agilis DSM 20509 NODE_292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186382 29 96.6 32 .........................A... TTGGCGTAACGCTCGATTTCCTCAAGCACTAC 186321 29 96.6 32 .........................A... ACAGTGGAAATCCACAAAATATAGGCAGGTGG 186260 29 100.0 32 ............................. TCGGCACTAGTTTTGATTATGGGGGACAAAGC 186199 29 100.0 32 ............................. TGTAGGTGAGCACAATTTTACGCTGACTTATT 186138 29 100.0 33 ............................. CCTTAGGAGGGATGAGGAATGAACGAACTAGTA 186076 29 100.0 32 ............................. AGATTAGGCACGCTTGATTTAATCACAAAGTA 186015 29 100.0 32 ............................. AATGTGGGTAAAATTTGGTATGCTACACATTC 185954 29 100.0 32 ............................. TAGTTCGTTTACAGAATTAACGAGCTGTAAAA 185893 29 100.0 32 ............................. GCAACCTTACGCTCATTCATTGGTTCTTTATA 185832 29 100.0 32 ............................. CCTTCGGCGACAACATTTGAACTTACAGATTT 185771 29 100.0 32 ............................. AGCTTGGTATTCAATAATTTCATATTCGCCCA 185710 29 100.0 32 ............................. TTGTGCTGTTGCTAGCTTGTTTACTAGCTTTA 185649 29 100.0 32 ............................. CATCACTAGGTATGCTTGCGCCGTCAACGCTC 185588 29 100.0 32 ............................. TTTCACCTATCCGCATACCTGTGTAGATTCCA 185527 29 96.6 32 G............................ CAAAGTTAATGTCGTCCCAGGTTAAGGCTAAG 185466 29 100.0 32 ............................. AATCTCATCTTTAAATCTGTTGATGACAAACA 185405 29 100.0 32 ............................. CTGTTGTTGTCGCTATTATTGGCGTTATTTTA 185344 29 100.0 32 ............................. AACTCCGTCGATGACGTCACCCACAGTTATAA 185283 29 100.0 32 ............................. AATTAGTGCAATTCCCGGATGGTCGTTCTTTT 185222 29 100.0 32 ............................. TTGGCGAAGTAATGGCCTTGACTTGGAAGGAT 185161 29 100.0 32 ............................. TGCTTGGTCTGACGAGTAAACAGCAACGATTA 185100 29 96.6 32 G............................ TAACTTGATTTACCCCGGGCAACAATTAAATT 185039 29 100.0 33 ............................. CATTTCCGTGAAGGCATTGATTTTGAGGGCGTA 184977 29 96.6 32 G............................ CGGTCTATGACATCATGGACACTGAATGAGTA 184916 29 100.0 33 ............................. TTCACGTCCTTCTAGTGTAACTGGGTATTCGCG 184854 29 100.0 32 ............................. CAACTAGGCTTGCTCCTTTTTTATTTTCGATA 184793 29 100.0 32 ............................. GTTATCACTTACGAACTGGGGGACTAAGTATG 184732 29 100.0 33 ............................. TTAGCCAACGAGTGGTGTGTCTCGTCTGTGATA 184670 29 100.0 32 ............................. TGATTTAGCTGTGATACCTTTGCGCTAGCCGT 184609 29 100.0 32 ............................. TCATGTTTACCCCTCCTAGAATAGGTTTTCTT 184548 29 96.6 32 G............................ GTCTGATTCTTAGCCAAGAGCTGCGACATCAG 184487 29 100.0 32 ............................. ACATCCCATCGTCAGGTCGGGGGACGAAGATA 184426 29 100.0 32 ............................. TCAATCAATTCTGCCCCACCCTTAGTTGAGAT 184365 29 96.6 32 T............................ AAGAAATAGATGAATTAAAAGACATTACCATG 184304 29 100.0 32 ............................. TCTTGGAAAACTCAATCGAGTGGCAATACACG 184243 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.3 32 AGGATTACCCCCACTAGTGTGGGGAGAAG # Left flank : TATTATAACATGTTGATCCCGAGCCAAGCCTAGCGGAAACGTTAGGAAGGTGTAACGACTAGGAAAAGTAGGCTAAAAATAAGAGTTTATTCATGCTGAAATTCCCACGAAGGCAAAACTCCCTAAAGTAAGTGTACCTAAATAGATAACGGAGGAAATAGCCATGAAACCTTATAAGTGGAAAAAGGGTGATGGAATAACAACGGTTTGCATAATTATTGGTGCGATATTAGGATTCATTGGTGGAATCTTTTACCCCTCACTACTAGATGAGATACTTCATAAGTTTATTGAGTTTACTATAGTGATAGTTGTTATACTTAGTCCGATTATTGTAATAATACGTATTGCAAGGAAATTTTAGAAAGCGAGCTAATAGGCCCGCTTTTTTTGTACACATTTTTAGGGATGAAAAGATAGTCTGAACACTATGGAAACATAGTGAAGCATGGGATAAAGAGCCTATGCGGTAACATATGGGTACAGGTCTGCGAAAAGTA # Right flank : ACTAAAAAAACGTTGATAAACCGGTATTTTTAAATTCGTAAACAACCATTTTCAATCAGTTTGATTGCAAGTTCGTAAGTCGCCATAGAATCAGACAGAGAATTATGCGGTTGAGTATTATCAATCTCATATTCTTTTAAAACCGTTGCAAAGCGATAGTTATCTAAAAATTCATTATCCTTTTTTACGAGCATTGCCAAGTCAACCACTCGATTAGCAGGTAAGTCTAAGCCTACTTGCTTGCACGCAGCATGTAAAAAATCAAAATCAAATCTAACATTGTAGCCCACAACAATTGATTTTCTTAAAAAACTTATTAAATCCTTAAGTCCATCTATCAGTTCAACACCTTCGTTGACTAATAATGTATCTGTAATACCCGTTAATTTTACAATATTTTCAGGTATAGATGTACTGATTTTTATGTACCGATTAAAAGTTTTATACTCTTTACTAACTTTACGTACGGCACTGATTGAAATAATGCTATTCTGCGTACA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATTACCCCCACTAGTGTGGGGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //