Array 1 281912-281558 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQB01000008.1 Clostridium botulinum strain SU0998 U21307_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 281911 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 281844 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 281780 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 281716 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 281652 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 281587 28 89.3 0 ......A......A.............A | TA [281562] ========== ====== ====== ====== ============================ ======================================= ================== 6 28 95.8 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCAGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATGTAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : ATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTGAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 346235-345942 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQB01000007.1 Clostridium botulinum strain SU0998 U21307_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 346234 30 100.0 35 .............................. CCTCATTTTTGAATTATGAATTACTTATTGTTTTG 346169 30 100.0 36 .............................. AATAGAAGGGCTTAACTATAGATTCCCGATACTTGA 346103 30 100.0 37 .............................. TAATCTTCTAAGTAAGGTATCATTACTGACTTAACCT 346036 30 100.0 35 .............................. ACTACCTAATGTTCTTTATTTTAAAATCACAAGTA 345971 30 86.7 0 ...A...........A....A........C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTACAAAATTGACATAATATGATATACAATGTTTGTGTTCATCAACTAAGAAAGACATTTCTACCTTTCTTAGTTGATGAACAATTTTCTTATTTAACGACTGAACTATAAAATCAAATAATTTTTCTAAATGCTGTATTATTCAGAAATGAACTTTACGGCATTTTTATGTCGCAATACAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGCGCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TGTTTAGTTACTGCAGATATTCGTTTTTAATATTAACATATGAATTAAAAATTAATATGATATATGACAAAAATTATTAAGAGTCTTAGAAGAATCTAAGGCTTTTTATTTTATGTAAAGTTTTAAAATGGAATATAATAGCTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGATATAATATAGATAAATTTGTATAAAGACATGTATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGACCTTGGCTGCAAAATAATGGGGATTTAGATTTATTTACGCGTAGATTGGAAGATAATTTGGAAAAGAAATATAAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAAAGAGCATAGAGTTTAAAAATAGAGAGCCAATGCATTACGACTATAAAGGTATAAAGTTATTAGCAAATAAGGTAAGTATAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 350250-350025 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQB01000007.1 Clostridium botulinum strain SU0998 U21307_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 350249 30 96.7 35 ............G................. TGAAAAACATTAGAACCACATCCACAAGGGTTTCT 350184 30 100.0 35 .............................. GCTAAATTCTCATAAGAACCACGCCATCTGTCCTC 350119 30 96.7 35 ........T..................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 350054 30 93.3 0 ........T................C.... | ========== ====== ====== ====== ============================== =================================== ================== 4 30 96.7 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATCCCGCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCCTCCTAGAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCCGTACAATATTTCTCATAGAACTATTATATGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATTTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTAAAATAAAAGAAAAGAACAAAAATTTTTCCAACCGACTTTAAGTTGAAAATTTATGGAGACTATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATCAATGGTTTTATGATATTCTTGAAATTAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGGTATTGACTTGTAGTCTAAAGTTGCACCATAAGAAGGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATACGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCATAACCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 453939-453450 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQB01000007.1 Clostridium botulinum strain SU0998 U21307_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 453938 30 100.0 35 .............................. GTAGTTAAAATTGGTTCATATTCTACACCTATTTT 453873 30 96.7 36 ........A..................... TAGTTAATATCCTCGAGAGTTCTTAACCAAAAATTC 453807 30 100.0 35 .............................. CCTAATTGTTGAACATTAGTATTACTCTTTTGTGA 453742 30 100.0 36 .............................. TATACTTAATCATTAATTCCCTAAATAGAGAAGTCA 453676 30 90.0 34 ........T.......A..C.......... ATTCTTTATAGTATTGTAGTAATAATTCATTAAA 453612 30 93.3 35 ........T.......G............. TTTTGCTTATTTTACTTGTGCATTTACTACAATAT 453547 30 93.3 36 ........A.......A............. TTAAAACCTTGAAAATCTTCTAAAACTATAATGTTA 453481 30 86.7 0 ........T......GA............A | TA [453454] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 95.0 35 GTTGAACAGTAACATATGATGTATTTAAAT # Left flank : TATGGCGTGTCGCAATTGTGGTTATACCATACCATATAATAATTGATTTTAATAACGATTACTAGATAAAAGAAAAAAGATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATATTAAATACAATGCTTCCTAATAGGTTAAATATAAATGTACTTATTTAAACAAAAGAACCCCAATAAATGAGGTTCTTTTTGTATTGGTGCTGTATATTGGCTTATTTTTATTACATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAGTAATTGTAGCCTATGCTATAGTTATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATACTAAATATAAGATTTTCTATAAGGTATTGACCTTCTCCAAAATACAAAAGAACCCCAATAAACGGGGTTCTTTTTGCGTGGATTTATATATATTGGTATAGTGTCTTGGGCTGTTTTTATTATATCCAGATATAATAAATTTAATCACACATAAAGTTGTTACATAAGTTAAGCATTATGAGAATCATCTATAGTGTTAACTTTGTTGAACTCATTTAAAAAATCTTCATATAAGTTTTCCCTATGTTTTTGGCTTTGGCCTGTTATGATTTCAACTAATTTACAATGTTCTATAGCATTTTTTATGATAGTTCCCATATCTAAATTATCATTTGGTGATTCTAAATAACTAAGTTCACCCATAATTTTTTTACGTTGATTTTCAGGATATTTTGATATAGTATTTTGATAAGCTTCTATTATGGATT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //