Array 1 53063-47729 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894380.1 Acinetobacter tjernbergiae DSM 14971 = CIP 107465 strain DSM 14971 C502DRAFT_scaffold00028.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================== ================== 53062 28 100.0 32 ............................ TAGTCCGAACCCGCTAAGTGTCGCGGCGGTCA 53002 28 100.0 32 ............................ TATTTAGGTGGACGTAGGTGGACGGATGGTAG 52942 28 100.0 32 ............................ TGCATAAGGTGCGACAAACTTGGCTTTAAAAT 52882 28 100.0 32 ............................ TACATGCATAATGTGAATAAACCTCCTTCGGG 52822 28 100.0 32 ............................ TGCATAAGGTGCGACAAACTTGGCTTTAAAAT 52762 28 100.0 32 ............................ ATGATGAAATCTACCACCCTTTAATTATTAGA 52702 28 100.0 32 ............................ AAACAAAACGATTGCGCCATTCGGCTTAATGA 52642 28 100.0 32 ............................ CAATATTCAAGCGCCAAGTATTGCGGCACCAC 52582 28 100.0 32 ............................ ACTGCCACAAATACCAAGTACTTTAAGACGCG 52522 28 100.0 32 ............................ TAAGAACGATCGTGGTGGGTTGGTTACTTCTT 52462 28 100.0 32 ............................ TGTGGGGCGATTCAATAAAGATGACTTTGTTG 52402 28 100.0 32 ............................ AATACGCTTTCACAGACTGCGATGGACAAGAA 52342 28 100.0 32 ............................ GAGTAGATCGCTATGCTACAAATAACACTGCC 52282 28 100.0 32 ............................ AATTCAAGCAAAGGGGCGCTTTCAATTGCAGC 52222 28 100.0 32 ............................ TACAAGCTGACTTTGAGTTTAAAGTTGTAGAA 52162 28 100.0 32 ............................ CCAAACCTTTTCACAAGAGTAATACGCTTTCT 52102 28 100.0 32 ............................ AGTGGATATGTTTGCAGCAATCAGCGGCTTAA 52042 28 100.0 32 ............................ ATCATCATCGCATTGTGTATATGGCAAATATT 51982 28 100.0 32 ............................ GTCAGGCTCAAAGCTTGGATCTTCACTAAACG 51922 28 100.0 32 ............................ TCACGCAGCATGGGTTCTTCGCTTTCTTCATT 51862 28 100.0 32 ............................ TGAATAGTCATTGCTCTGATTCTTGGAACGGT 51802 28 100.0 32 ............................ AGGAAAAGGCGGTGAATGTTTACCGCGTTCTG 51742 28 100.0 33 ............................ TATGCCGCAAAGCTAGAAAACGGTCATTCTGCG 51681 28 100.0 32 ............................ CTGTAAGACGCTCAAATAATCTCACACGACAT 51621 28 100.0 32 ............................ ATCACTTATCGAATTTTCAGGGGACGTTGAAG 51561 28 100.0 32 ............................ TTGGTGTAGAGATGACATTCACGCCACCTTGT 51501 28 100.0 32 ............................ TTTGCAAATCGTTGATGTGAAAGACGGCTATG 51441 28 100.0 32 ............................ AGGTGGGTTCACAGTTTTAAATTTTATACTTA 51381 28 100.0 32 ............................ TTTGTACAAATACAAATATTCAAAGTCATCTT 51321 28 100.0 32 ............................ AAGGAGATCCGTGACAGGCTGCAAAACCATAC 51261 28 100.0 32 ............................ CATAAAGTTAAAAAGTTCTGCCAACTTATAGG 51201 28 100.0 32 ............................ AATGATGAATGGGCAGCAGTTTATTTTACCAG 51141 28 100.0 32 ............................ GCAATAACAGCAGTACCCGCAGATACATCGAC 51081 28 100.0 32 ............................ CCGCTCATCTAGCCACACGTTTACATGGAAAT 51021 28 100.0 32 ............................ AAATTAACAATCCTGTCTCTGTTATACGTTTT 50961 28 100.0 32 ............................ TGTTGTCAATTGGATTACACTGTTGTCATAAC 50901 28 100.0 32 ............................ TAACGGCGGTCAGCAGTCTAAAGGGCTAACAC 50841 28 100.0 32 ............................ CTGAACGGCTTTTATGGTTAATCCCTCATAGA 50781 28 100.0 32 ............................ TACTGCCTGAGCAGCATCAAAGCCGACTTCTT 50721 28 100.0 32 ............................ ATCAACCTTATTCACTGCTGCCCAAAGGGATG 50661 28 100.0 32 ............................ TGCTGGCGCTCCTGCATTCCCGCCGTGCAGAC 50601 28 100.0 32 ............................ TTTGATGATGTACATTAAAGCGATGTTTCGCG 50541 28 100.0 32 ............................ ATATTAGTCCGCCAAGCCCTTTTAAACCTTGC 50481 28 100.0 32 ............................ AATGATTCATGTGTTGCCAGCAAAGTCTGTAA 50421 28 100.0 32 ............................ ATTTACTTCTGTCGTTTTAAGTTTCATTGGTT 50361 28 100.0 32 ............................ AGCTTGGTATGCGTAAAGCGAATGGCAGCAAC 50301 28 100.0 32 ............................ GAATCAACTATTAGCAGAGGCAGGCATTCAAT 50241 28 100.0 32 ............................ TGAACAGTCAATTGGTCAGGTTGTTCGTCTTA 50181 28 100.0 32 ............................ TGCGAGATGGCGTAATTTCCCATTTGGTGTTT 50121 28 100.0 32 ............................ ATCTGAGTCAACCATGTATTCACCACCTGAAG 50061 28 100.0 32 ............................ ATCTTGAGTCTTTGTTAGTGTCGTTTGACAAA 50001 28 100.0 32 ............................ GCTTGCTGGTTTGTGCTTCTGCGTCTCTCTTG 49941 28 100.0 32 ............................ ACTTTACTTTGTAAAGCACTTTCCTTTGTAAA 49881 28 100.0 32 ............................ ATCTTTTGTTACGATCAAGTAATTTGAATCTT 49821 28 100.0 32 ............................ TTGTAGGGCATTTAATACTTCTATTCTGTCCA 49761 28 100.0 32 ............................ ACAGCATTGGTAGGTAAAAAGTTATGTAATTT 49701 28 100.0 31 ............................ GTTGCCGAAGCTGCACCGTAGTAACCAGTTG 49642 28 100.0 33 ............................ TATGTCAAGCACAATTCTAAATTATTTATTTCT 49581 28 100.0 32 ............................ ATTCAGTGAGTTTTTAAGGTGAGTCCAAAACA 49521 28 100.0 32 ............................ TAGCACACTAGTCTATTAGTGTCAATCAGTAT 49461 28 100.0 32 ............................ CACTTTGATTAGTTCCTAAGTGTAAATAACTT 49401 28 100.0 32 ............................ TCTATGAAATCACTAGGCAATATTGTACTTGA 49341 28 100.0 32 ............................ TTAGAAATCCTTGTGAACCGTGCCTGACCTAG 49281 28 100.0 32 ............................ TTAGATAGCTTTTTAGTCTTTTCGTTGAAATT 49221 28 100.0 32 ............................ AATTCAAAGTTTAAAGCTTGGCTGAATAATTC 49161 28 100.0 32 ............................ TTATAGAATAAAAAGATTAATTCATTGATAAT 49101 28 100.0 32 ............................ GCATTAGAGCAACCGAAACAAGTTGAATCTGT 49041 28 100.0 33 ............................ CCTACAAAATAACTATTGATTTCAGCTTTAGCT 48980 28 100.0 32 ............................ TTAGGAAACGACCAATTCAAGCCAAATTTTCG 48920 28 100.0 32 ............................ TAATTTCTGACATGAGCAATGATGAATATCAC 48860 28 100.0 32 ............................ AATTCGAACGGTTCGTAGCGTTCTAAATAACC AT [48848] 48798 28 100.0 32 ............................ ATCCAGATATTGAGAATCATAGACTTGGTTGT 48738 28 100.0 32 ............................ AGCACCTTGACGCCCCACGGCACTATCAATTT 48678 28 100.0 32 ............................ TTTGTAACCAGTTGCCGAAGCTGCACCTTGTT 48618 28 100.0 32 ............................ GAGCAATCAACAAGGTCCTGACAAAGCCCGCG 48558 28 100.0 32 ............................ TTGCGCCAAACCACCTCTCACAGTGTCATTTC 48498 28 100.0 32 ............................ TAATACGCAAGTCCAAGTCAATATTCCAAAAT 48438 28 100.0 32 ............................ CATGACTTTTTGCTCACGCACAGCATTTGCTG 48378 28 100.0 54 ............................ ACTGGACTAGGCAGCTTAGAAAGCGCATGATGATAACTTTTCAATGGTCTTTTA 48296 28 100.0 32 ............................ TCAAACTTGTACATATTCTTTTCACATGGTTG 48236 28 100.0 32 ............................ AGAAGGCGGTAGACAAAAATATTGTAATCCAT 48176 28 100.0 32 ............................ GCTGCAAAAATCTGAACAGCTTGACGCACTTT 48116 28 100.0 32 ............................ TATAATCCAACAAAGCCTTTTGATGTTGATAC 48056 28 100.0 32 ............................ TCAGATTGCTCCTGATCTTTGGAAGCCTGCGA 47996 28 100.0 32 ............................ GTGTGGAGCATTGGCTCTTATTTGTTCTATGT 47936 28 100.0 32 ............................ AATCAATGGTTCAGCCAACTTTAGATTACATG 47876 28 100.0 32 ............................ TGCAGGCGCACCAGGCTTCTGCCATAACCAAA 47816 28 100.0 32 ............................ AGTAGGAGTAACAGTTCCAAAAACATTACAAA 47756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================== ================== 89 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCAGTAAACGCAATTTGTCTTTGCAGATTACTTATTTCAATCGTGTCCGCATCAATAATTGTAATTTTACCCACACCAGCTCGCGCGAGTAGCTCGCCACTCGTACAACCTATTCCCCCTGCACCAATAATTAAAACATTCGCAAGTTTTAATCGTTCTTGTGCATCTATGTCCCAACCATCTAATAAAATCTGACGACTATAGAGATGCATTTCCTCATTACTTAGTTCAAATTCGTTTTCTGAATGATTTGACACATTGGTTCTCTAAATTGTTTTAACAGTATTAGATTTTATGGATGTGGATGTGATTAGGAAAGGAAATTCTATTATTTAAGTTGATTTAGCTTTGACAATCCCCTTTTTTTACCCCAATATTTTATACACTCATTAACAGCTTAATAAAATCAATAAGTTACCACTTGGTCAAAAACTTTGGGTATTTACTCAAGTTTCTTGATAAACCTATGTTTTAGCTTGTATTATTGACTCTATTTTACT # Right flank : ACATTAGGAAATCGGGTATGAGATCAATGGTTGTTCACTGCCGTATAAGCTTTCAAATAAATGATTTTTATCCTGTTTCAACCATGAAAAGAATGCTTTGAAATTGTTGATATGAGAACACTTATACCAAATGGCGATAAAATTGATTTCTGAGAGGCTCAATTGGGCTGGTCGAATTCTTATAGAGTGACGACTTTGTTTAAGAAATTTCCAATAAGTTGCTTCAAATTTAAGAAAGAAATCATCGATTACACAGAATAATTCGGTACTATTGAACATTAGGACTAGAGCTTTAAGTTTGGTGTGGTAACTCAACTGATGGCTCTAGTCCTCTTATTTTTCAAGTCAATTTCTTATCCGAGATTCGGGTTAGTTAAGCTCCTTCTGATCATTCATGATTTCATAAGATTGTGCTCGGAGTAAATCTTCTTTTGTCGAAAATGCACTATTACGAAGTTGTTCAATTGATTGCTGTTTATTGGAATCACTCGGATTGTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69559-59747 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894353.1 Acinetobacter tjernbergiae DSM 14971 = CIP 107465 strain DSM 14971 C502DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69558 28 100.0 32 ............................ GTAAAACACGCGGCTGGACAAAAGAAAGTGAT 69498 28 100.0 32 ............................ TATCAATGTAGGGCTAAAATTCGCATCAAAAT 69438 28 100.0 32 ............................ ACCATATCCGCCGCCAGTGCTTTGATTGCCTT 69378 28 100.0 32 ............................ TGACCAAGATAAGCTGACTTTTGGCGGCACAT 69318 28 100.0 32 ............................ AAGTGATTAGGTTGTCAAGTTCAAAAGAAACA 69258 28 100.0 32 ............................ AATCCGCCGCCTGCTTGAATCGTTCTAATGCC 69198 28 100.0 32 ............................ ATTTTCAGGTTTTAACTCGTGGTGGTATTGAT 69138 28 100.0 32 ............................ TATGAGTGATAAGAATGGTCGTGGTGGTGTGT 69078 28 100.0 32 ............................ TTGAAGCTTTAATTTCTCAGCATCTTGACAAT 69018 28 100.0 32 ............................ ATTGCAGAATATTCAAATTTCTACCTTGAAGC 68958 28 100.0 32 ............................ TCAAAATGCGTGACGACATGGTGAAAGCAAAT 68898 28 100.0 32 ............................ TGATCAATCCGAAGTTTTTCCGCTTCATAGTC 68838 28 100.0 32 ............................ ACGTATAAAGTATATCTCTTCAACAGAATATG 68778 28 100.0 32 ............................ CGATGGGCTTCTCGTTCAATACCAACGCCGTA 68718 28 100.0 32 ............................ CTTGAGCGCTTGCTCTAACTCGTCAGCGCATT 68658 28 100.0 32 ............................ GCCAAGAGTACGAAGCAAGCTTTGAAACTTAT 68598 28 100.0 32 ............................ AAAATTATGCAAGGGCATAACGTTTATGGCAC 68538 28 100.0 32 ............................ TGTTAAGACTGAGCTTGTTGAATTAACAAGCG 68478 28 100.0 32 ............................ TGATCGTAGACCGCTTCTAAAACTGAATAGCC 68418 28 100.0 32 ............................ TATAAGCAGCCATACGGCAAAGCATTACTTAC 68358 28 100.0 32 ............................ TAACCACCAAAGTTATTGGCTGTTGCTATGGA 68298 28 100.0 32 ............................ ACTACGCTCACGTACAGAGTACGAAAGGATAC 68238 28 100.0 32 ............................ AGAATCGTCAGAAACAACACCACGACCAACGC 68178 28 100.0 32 ............................ GTTCGCTGACCAATACGTTGTATGTGGTCAGG 68118 28 100.0 32 ............................ TGAGAAATAAGGAACTGTATTTATCCAAGTGA 68058 28 100.0 32 ............................ TGCACCAAACGAGCACCCAACTCTTTCATCTG 67998 28 100.0 32 ............................ ACCCGTTTCTGGGTCAGGTTCATTTTCTTTGA 67938 28 100.0 32 ............................ AGTCGTCATCCGTGAGCATGATGCTCGTGTCT 67878 28 100.0 32 ............................ AAGCTTGAGAACGGCGCGTTACTCCCGATCCG 67818 28 100.0 32 ............................ CACAAGGCGAACCAAAGCTTCTGAGCAATCTG 67758 28 100.0 32 ............................ ATGAATTTAATCGATGGGCTTAAATTAAAAAC 67698 28 100.0 32 ............................ TGAACTACCCGACTCTTTAAGCTCTCGCATTA 67638 28 100.0 32 ............................ TTGCGCATTACATTGATAGTGCAGATTTCCAA 67578 28 100.0 32 ............................ AAGCCGCTATTGCAGCCAAATTTAATTTAGAT 67518 28 100.0 32 ............................ AACCATATCGTCAACTAAGTAGCCACCAGTTA 67458 28 100.0 32 ............................ AACATAAAGACTCGATTCTAAAAGGCAATCAA 67398 28 100.0 32 ............................ CAAGAATGTTAGGGGCGTTTTAACGACATGAT 67338 28 100.0 32 ............................ TTAATACATGACCACCAACTCGCTGAATACCA 67278 28 100.0 32 ............................ GTACTGTTCAAGCCATTGATGAGCTGAACGCT 67218 28 100.0 32 ............................ AAGAAAAAATTGCAGTACCTGCTGACATGATT 67158 28 100.0 32 ............................ AAGCCTCTGAAAGCTTACACATTGGCATGGAT 67098 28 100.0 32 ............................ TCCAAAGATTGCCTCATAGTCTGCGATGGCTT 67038 28 100.0 32 ............................ AATTGAAATGAAGATGAATCCACAGGGATTTG 66978 28 100.0 32 ............................ TATTTTTCCATTAAAAATTAACTGCGTATCAT 66918 28 100.0 32 ............................ ATGAACTTCACCTATATGTGAAGCTAAAGCAC 66858 28 100.0 32 ............................ AATCAAAAAAGCAATGCGCTCATGTGACCAAT 66798 28 100.0 33 ............................ TACACGGATGCACAAGTTTAGCAAGTTTCATGC 66737 28 100.0 33 ............................ TCATAAGACATTTCATTTTCTAATTGCACTTTC 66676 28 100.0 32 ............................ ATCTGAGTCAACCATGTATTCACCACCTGAAG 66616 28 100.0 32 ............................ TGATGGGATTGATGATCTGACTGTTTTGACCG 66556 28 100.0 32 ............................ AGTTTCCGAAAACTGATCCGCAGCCCAAGCAA 66496 28 100.0 32 ............................ TTAGCAAACGACCAATTCAAGCCAAATTTTTG 66436 28 100.0 32 ............................ TATTCAGATAATTTGCTAGGGCCACAACAACC 66376 28 100.0 32 ............................ CACCAGAACTAAGCCAAGCACCCATGTCAACA 66316 28 100.0 32 ............................ ATGCAATAACTTCTTGATCTCGATTGAATGTA 66256 28 100.0 32 ............................ TTTGTAAAGTGGTCTACAAGTGAAATCTCATT 66196 28 100.0 32 ............................ ATCAAGCAGGGGCAATCTTTGTACAAGGTATA 66136 28 100.0 32 ............................ AAATAAAGAGGATGCAGAAGCATTACTTGATG 66076 28 100.0 32 ............................ AAACAAGATCACCACGCCCTTTCTTGTCAAAA 66016 28 100.0 32 ............................ CAATACTTAAGCCGTCTTGAGTCTTTGTTAGT 65956 28 100.0 32 ............................ TTGCTGCCAAAGTCTTTTTAATGTATATGCTT 65896 28 100.0 32 ............................ TGAACTTGTCAATTGCAATTTAAGATTTATTT 65836 28 100.0 32 ............................ ATTGGAAATATCAGCAAGAATTTGCTGTGCTT 65776 28 100.0 32 ............................ ACTGTAAATGCTGCTGTTGCAAATGCAGGAAA 65716 28 100.0 32 ............................ ATATACGGGTTATCACTTAGAAGAAGGTGGTA 65656 28 100.0 32 ............................ AATTCAGCGTTTCAGCATAAACAAGGTAGAAC 65596 28 100.0 32 ............................ AAATCCAATAAAGCACCAACACACTTAAAGCC 65536 28 100.0 32 ............................ TTCACAGGGTCGTTGCGATGCTTGTATAAATA 65476 28 100.0 32 ............................ AATAATTCATCCAACCTTGAGCCGTTGCTGGT 65416 28 100.0 32 ............................ GCCCCGAAAGGGGCTTTTTAATGCCTGTAGTT 65356 28 100.0 32 ............................ ATTGATTATCTAAAAACAGTTGATGCTTGTGA 65296 28 100.0 32 ............................ AACCTGAATCAAAACTTAATGCAGCCATTTTA 65236 28 100.0 32 ............................ GATGGGTAATTTTGGTAACGCTATGCCACAAG 65176 28 100.0 32 ............................ TTGGCTACACCGTTTAAAGCTTCGGTATAACC 65116 28 100.0 32 ............................ AATAGTGATTTACAGACGGCGGACAAGTTGCA 65056 28 100.0 32 ............................ TTCATGATATGTTCGTGAATGCAAAACGTTAT 64996 28 100.0 32 ............................ AGGTGTTTGTACTCGGCGTGTCATAAAAAGCC 64936 28 100.0 32 ............................ TGAGCGTCAGCAGTCTTTTTCATCAAATTTCA 64876 28 100.0 32 ............................ GTCTGTAAATCACTATTGGGTAGCAAGCGGCA 64816 28 100.0 32 ............................ AAAGTGACAAGCTGTACCAGCGTACGCAATTG 64756 28 100.0 32 ............................ TGATATTCGACTGAGCTGCTAAACATCTCAGA 64696 28 100.0 32 ............................ TTTGTAAAGTGGTCTACTTTACCTAGTAAACC 64636 28 100.0 32 ............................ AGTAGTTCATCCAGCCCTGTGCTGTTGTTGAT 64576 28 100.0 32 ............................ CAAAATGCTGCACTTACTTTAAACAGCGTTTA 64516 28 100.0 32 ............................ GCTGTATTGGGTCGGACGTGTGAACTGGTGAT 64456 28 100.0 32 ............................ AGCAAGCAAACCAGTTGCACCACCAATGGAAA 64396 28 100.0 32 ............................ AATATGAGGGTGAAGTATCTGGTTGTTGTCCA 64336 28 100.0 32 ............................ AAAACAAGTTGAATCGGTTGTGAGCATTAGTG 64276 28 100.0 32 ............................ GCTTGTATAAATCTGTATAAGAAATTTGGCTT 64216 28 100.0 32 ............................ AGATGGTGAGAACACATCTAAACAATACAAGC 64156 28 100.0 32 ............................ ACATCATCATTTTGAATTTCATTGGCACGAGA 64096 28 100.0 32 ............................ AATTCAAAGTTTAAAGCTTGGCTGAATAATTC 64036 28 100.0 32 ............................ TAAGTGTAAATAACTTTGTTTTTTAACCATTA 63976 28 100.0 32 ............................ TAGCACACTAGTCTATTAGTGTCAATCAGTAT 63916 28 100.0 32 ............................ TCGATAAACTTTGGGATAACTTCATTTCTAAA 63856 28 100.0 32 ............................ AGTATATTCAACTAGTAGTTTAGGGTCTGCTA 63796 28 100.0 32 ............................ CTTTAGCTATCTTTAAAATTCACCTTAAATTT 63736 28 96.4 32 A........................... TTTTGGATGCCTTTCTAATTCCCCTATTAAGA 63676 28 100.0 32 ............................ ACTATAAACGGCTATTGTCTATCTAGTGGTGC 63616 28 100.0 32 ............................ ATATTAAGCCCCTACAAAATAACTATTGATTT 63556 28 100.0 32 ............................ ATGGTAGTTATCAGCGTTTCTACGCTTATATT 63496 28 100.0 32 ............................ ATTAAAAACCTTGAAAATCCCCCCATAACGTT 63436 28 100.0 32 ............................ TAGCTGGATAAATACAACATCAGGCGCAACAA 63376 28 100.0 32 ............................ TTTACCCGTATTAAAGAAAATGCGCTGCTTCA 63316 28 100.0 32 ............................ ACTTGGTTAAAGCAGGAAAGCAAAGTTGGTTA 63256 28 100.0 32 ............................ ATTTGGTTTGTTGATGACATGGGGCTATAAAT 63196 28 100.0 32 ............................ GCCACTTCAAAACCTAAATTGCTCATAATCAG 63136 28 100.0 32 ............................ AGACGAACGTGATTTTATCTTTTTTCATCTAT 63076 28 100.0 32 ............................ ACTATAAACGGCTATTGTCTATCTAGTGGTGC 63016 28 100.0 32 ............................ TTAGAAATCCTTGTGAACCGTGCCTGACCTAG 62956 28 100.0 32 ............................ CAAAGGATGCAGCAGATCGCGCTGCATCGAAT 62896 28 100.0 32 ............................ TGACAGATATTTAATCCTTACCCCTTGATGCA 62836 28 100.0 32 ............................ ACTCGAAACATAGTAATAAAATCGAAGTCAAG 62776 28 100.0 32 ............................ TTGCCACGCCTTAAGGCATCTAAAAACTCAGG 62716 28 100.0 32 ............................ AACGCATACCGAGCAAGCACTGCGGTTGTGAA 62656 28 100.0 32 ............................ GGATGGATATTTTGATCGTGGCATGATCATGT 62596 28 100.0 32 ............................ TGACTTCGATAGAACAAAAAACAACTACAAGG 62536 28 100.0 32 ............................ AATCATCAAAATTCAAACCGCAAAACCGATCA 62476 28 100.0 32 ............................ ACCAACGGAAGATAAGACATTTCAACATGCGT 62416 28 100.0 32 ............................ TTTTTGCATAACATCAAGATCAAGCTTGTCTT 62356 28 100.0 32 ............................ GATTGCAGGAGCAATATATGGGCCAACATAAG 62296 28 100.0 33 ............................ AGCCTTGTGACTCAAAAAAAGCCCTTGCACCCT 62235 28 100.0 32 ............................ ATCTGGAACTTCTACTGCATCTGACAGTTCAT 62175 28 100.0 32 ............................ TCAAGAAGCTAAGATTGAAGTTCTAGAAGTTG 62115 28 100.0 32 ............................ AACCACCCACTTTAAATCCAGCTCATCTTGCT 62055 28 100.0 32 ............................ TATTGAAACAGGCTCGTGCAGTAAATGCACAG 61995 28 100.0 32 ............................ AGAAGAACAGGTTCAAGCTGCACAACCTGTTC 61935 28 100.0 32 ............................ ACGACCATTTCCAACGAGTACCGCTACAGCAT 61875 28 100.0 32 ............................ TAAATTGCTCATAATCAGCTCTCTTATAGTTC 61815 28 100.0 32 ............................ AGCTGGCAAAGCAACTGTACCAGTTGTTACTG 61755 28 100.0 32 ............................ GAACAAGCATTACCATCAACCGCCACTTCAAA 61695 28 100.0 32 ............................ AGCACCTTGACGCCCCACGGCACTATCAATTT 61635 28 100.0 32 ............................ TGATGCAGATGACTTGCTTTGTCGCAACCTCA 61575 28 100.0 32 ............................ TTTGTAACCAGTTGCCGAAGCTGCACCTTGTT 61515 28 100.0 32 ............................ AAGTTGTTTTGCCTGTGCCGATCGCTCCAGTA 61455 28 100.0 32 ............................ AAAAAACAAAAGTAATGCAAATTCACACTACT 61395 28 100.0 32 ............................ TGTTAGTGGACAAACTTCAACCATGATTTAAT 61335 28 100.0 33 ............................ CAAGACAAATCATTTGCAAGACATCACCTTTCA 61274 28 100.0 32 ............................ AAGAATTAAAGATAGCGGGTGATCAAGGTTTA 61214 28 100.0 32 ............................ TTGAAATTAATTGGCATAAATGCAGGGTGAAT 61154 28 100.0 32 ............................ AGTCACATTACGAAGTGAATACCAGATAGCAC 61094 28 100.0 32 ............................ AGAAGGCATAGATGGTGAGTTGGCAAAAGGAA 61034 28 100.0 32 ............................ TGACAAAGCCCGCGACCAATCACTTGTATAAT 60974 28 100.0 32 ............................ GATTGGCGCATTTACACCTGAACCTATTATTC 60914 28 100.0 32 ............................ GAAAAAAGAATCTTGAGAAAGGCGAGGTTTGT 60854 28 100.0 32 ............................ TGTGGAATCTAAGGTTAATTGAGCACTTGGAA 60794 28 100.0 32 ............................ TTCATATCTTACAAAACAAGCTTTAGACGCAA 60734 28 100.0 32 ............................ GTGTCGATATTGCATTTGATGACTTTGAATCA 60674 28 100.0 32 ............................ AAATGCAGTAGACGCATGAATCTCATCAAAGA 60614 28 100.0 32 ............................ ATCCAAATTGTTTAACACAGTCATTTATTTTT 60554 28 100.0 32 ............................ ATAACAACATTCCTTTTAAAAATGATTTGATT 60494 28 100.0 32 ............................ ATAGCATTCGACCTCAATTTGTGCAATCACGC 60434 28 100.0 32 ............................ CATGTGACCGCTTTCCAAACGGCTTAATTATT 60374 28 100.0 32 ............................ AATAAAATTGATATAGATGGACGTATTGTTTC 60314 28 100.0 32 ............................ ATAAAACTGTTGTACCAGGCAAAACCAATGTT 60254 28 100.0 32 ............................ GCCCGAAGGTGGCATTGGCTGGATCTACTTGT 60194 28 100.0 32 ............................ TTATAACGATCGCGAGCTTGGAGAGGGTGCAA 60134 28 100.0 32 ............................ GTTCGCTGACCAATACGTTGTATGTGGTCAGG 60074 28 100.0 32 ............................ AATTTCAAGCGAATCAGACCAAGTTAAACCAT 60014 28 100.0 32 ............................ ACAAACAAAAATCTGAATTGGCTTACCTGTAT 59954 28 100.0 32 ............................ TCAGAATGCAACAATGCAAGCTGGATTCCCAC 59894 28 100.0 32 ............................ AGACTCTACAGCACATGGTTTATTCCAAGTAT 59834 28 100.0 32 ............................ ATAAGCAATAGGACTGCTTAAGCTATCTTGTA 59774 28 89.3 0 A...........A...........T... | ========== ====== ====== ====== ============================ ================================= ================== 164 28 99.9 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GATATCCGAAAATGGCTAGATCGTTTATTAGATTACACACATATCACGAGTGTACGTCCTGTCCCTGAAAATAGAATTACAGGCTATGCCATTTATAGGCGTAAACAGGTGAAAACTAATCCACAGCGTTTGGCTCGTCACCGTGTGAAGCGTGATGATATTGGTTTTGATGAAGCATTGGCTCGTTATAGTAATGTTGTAACAACAACGGATTTACCTTATATCCAATTGCAAAGTTTAAGCACTTCTGATGAACAAGATAAGAGACGGTTTAAGTTGTTCATTGAAAAGAAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGTACTTATGGTTTAAGTTCACAGAGTTCTGTACCCGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAAGTTATAAACGTGGGTTGAAACTTGGGTCTTTTACTAGATTTAAAGCTTAACTCACTGTTATAGCTTTATTTTTTGTGTTAATATTACA # Right flank : GTTTAAATTAAATATATTTTTATTTCCTAGTCATATTTTATTAGTTAAAATAAAAAAATAAAAAGAGTTTATGCTTTATTATTTTATGCGTAATTCAATATTATTTTTTGGGACTTATATTTGTGAAAAAATATCCTATTATTCTAAGTATTCTGTTATTTAGTTTCATACAAAGCGTATGGGCAAATATGAGTCCGAAAGCTCGAATTATCAATGGCAATCTGACTACAGAAGCACAAATCCCGTGGCAAGTTGCACTCATAGCTAGTCCCTTAGACCCTTATCAATCCTACATTTGCTCAGGAAGCTTAGTTGCAGATCGTTGGGTGGTGACAGCAGCACATTGTATTGAACAACTCGAAAAACAAAACAGTGATTATTATATTTTGATTGGCGCACAAAACTTACAAAGTATTCAATTAGGACAAATTATTAAAGTTAAAAAGGGGTATATACATGAGAAATATAATAATCATATTTATGATAACGATCTTGCACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //