Array 1 125328-127188 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWM01000002.1 Dickeya zeae MS1 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125328 29 100.0 32 ............................. ATGAAACTGATCAACAGGGCCAAATCTCCGAT 125389 29 100.0 32 ............................. CGACACCAGCACTACAATGCGCGATGGAGATA 125450 29 100.0 33 ............................. CGGATCGGTATCGCCTCCACCAGGCTCAACCCC 125512 29 100.0 32 ............................. ATTAATATGGCGACGAAAGGCCTGCCGCTGAG 125573 29 100.0 33 ............................. CCGGGTGATGAATGCGAGCTGATATTCAACGAC 125635 29 100.0 32 ............................. CGATGATGGAGCAGGGGCTGGCTGGCGTCGAT 125696 29 100.0 32 ............................. TTCCTTATTTCAGAAGACGCTTGTGAGTTCGT 125757 29 100.0 32 ............................. CGGTGCTACAGGCGCACTCAAATCTCGGCGGA 125818 29 100.0 32 ............................. ATGGATGGAGACGGTATAGACCAGTCAATACA 125879 29 100.0 32 ............................. GCATACGTGTTGTAAATTGCTGAGTTGGTCAG 125940 29 100.0 32 ............................. CGGAAACATGGTGACCGTGTCATTTGACCTGG 126001 29 100.0 32 ............................. CGTCGTAATCAACTCCTGCGATTCAACCGAAT 126062 29 100.0 32 ............................. TCCATACTGATTGGCGACGATCAACAGGGCTA 126123 29 100.0 32 ............................. GAGATATGGCCCAAGTCGATTAAGCCAACGCT 126184 29 100.0 32 ............................. ATCGACCTGCCGACAGCGGAGAGACTATTGCG 126245 29 100.0 32 ............................. AACCATTTGGAGTCCTTGGCGCTCTTGCTAAA 126306 29 100.0 32 ............................. AATCGATCGAATGCTGCAGCGCGCTTTTCCTG 126367 29 100.0 32 ............................. GACGCCCTTATAGGCCTGTCTGATTTCTTCCT 126428 29 100.0 32 ............................. GAGTTCAGGTGAGCAACTGCCGATCTGGATAT 126489 29 100.0 32 ............................. TCTAATTTAAACCTGTTCCCCGGGTTCCTGGG 126550 29 100.0 32 ............................. TTCCGCTAGATAAGCAAACCCGCCAACATGCT 126611 29 100.0 32 ............................. GGTCGGAGGTATGGGTAACGTGGAACCCTGAA 126672 29 100.0 32 ............................. TTAGTGAAATACGCAAACGAGTATCCGGGCCT 126733 29 96.6 32 .....................G....... TTGCTTGATGAGATGGAGTCTTGCGTTAATAA 126794 29 96.6 32 .....................G....... AATATCCAGCTCGCCAACTGCGACGAATCCCG 126855 29 93.1 32 ......T..............G....... GCGCAGGTGAGGCTTAGGATGATTTGCCATAC 126916 29 100.0 32 ............................. GTTACATACGCGTAAAACTGACACGGAGACAG 126977 29 93.1 32 .....................G......C ACAACGCAGGTGGCCACTACGGCGTTTGTGCA 127038 29 93.1 32 ..A.........G................ TCAGTTATCGCATGCACAAAAGCCGTGGTAGC 127099 29 100.0 32 ............................. GAGCCGGAAAGCGAGAAGGTGAAGGTGGATGA 127160 29 86.2 0 ..A........A..............T.A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGTTGGCCGCTGGCGAGATTGAGCCACCGCAGCCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGCCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGAAAAAATCGGTGGAATTTTACAGTCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAATAAATCGGGCACGCTGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4889-5772 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWM01000025.1 Dickeya zeae MS1 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4889 29 100.0 32 ............................. ACATAACGCCGCCGCAGCGCACCAGCCTGAAA 4950 29 100.0 32 ............................. CGCAATCTCAAAAAAACATATCTCGGTTGTAC 5011 29 100.0 32 ............................. TTTCGCACGCCGTTTGAGGGGTTGCGCGCTCT 5072 29 100.0 33 ............................. CCGACGCTGCTGACGACAAAGGGCCGGGCCTAC 5134 29 100.0 32 ............................. TTGATTAACTGACGCCTGATCCGGTTGCATTC 5195 29 100.0 32 ............................. GAATAAATCATGAACACAGCATACACAACAGC 5256 29 100.0 32 ............................. GACTAGGACTAGATGTAGAGAAATTAACGGGC 5317 29 100.0 32 ............................. AGGTGGGTTATCAGTACGATGGCCCGCTCACT 5378 29 100.0 32 ............................. CGCCCGGATCACTTCACGTTGCTCATCAAGAA 5439 29 100.0 32 ............................. CAGAAAAAAATGGTGGCCGAGGAGTGGAAACC 5500 29 100.0 32 ............................. AGGGGGGAACAACCAGCGCGGCGTAAACGCCA 5561 29 100.0 32 ............................. CTGGCGGCTTATGAGCAGGCAGCGAAAGAGCC 5622 29 100.0 32 ............................. TGGGCTGCAAAGCAATGCGTCACGCAAACAAT 5683 29 96.6 32 ..........................A.. GCGTATGAGATTAGACCCGATTTGCCTGAGAT 5744 29 86.2 0 .............G...........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAATGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCTGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGTAGCAGATACACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATCACCACCTTTATTTATCAATCGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATACTCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCATCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATTTGTATCTATCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGGGAACAGGGCACGCCGGATGTTCGTATCGCCACTGTGACCAATTTCCCACACGGTAACGATGATATTGATATCGCGCTGGCGGAAACCAATGCGGCCATCGCTTATGGTGCTGACGAGGTCGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 320005-316498 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWM01000001.1 Dickeya zeae MS1 contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 320004 28 100.0 32 ............................ TTCACTGAGGTTAAATACGGCAGAAAGGCCAA 319944 28 100.0 32 ............................ TTCCCGGAATGCTGGCAACCTCGTTATTGCCC 319884 28 100.0 32 ............................ CGGGAAATCATCGAGCGCGATTACCACTTATC 319824 28 100.0 32 ............................ TCGAACAGGTCGGCCTGAGCGGCGATATCGCC 319764 28 100.0 32 ............................ CAGCCGAACGGCCATAGCTCCGCGCCGTTCAT 319704 28 100.0 33 ............................ AGATGGGTATCATTGCCGCTGCCGCATCCGATC 319643 28 100.0 32 ............................ TAATCCAGCTCAACCGCAAAAAAGCCATCGAC 319583 28 100.0 32 ............................ ATTTTTCAGCAGTAGGCGCTTTTCCTGCCTGC 319523 28 100.0 32 ............................ TGAGGTATAGCAAACCCAGCCGGTCCAGAAAA 319463 28 100.0 32 ............................ TCTATCACCCACTGGGCGGCAAGATGGTAGAT 319403 28 100.0 32 ............................ AGATAGCTGCGGCGCGGAGTTGCGCAAGCCGT 319343 28 100.0 31 ............................ AGAACAGTGTTAACCGATTGCAAAAAACACC 319284 28 100.0 32 ............................ GTTCGCCGGCCTCGGCTGGGCAATGCCAAATC 319224 28 100.0 32 ............................ CATGAGTCTGATTTCCATTTTTCGACGATCTG 319164 28 100.0 32 ............................ AGGATACCAGCGCACTGATTAAAAGCACCGAA 319104 28 100.0 32 ............................ AATCGAAAATGAATGCGGTGAAATGACGGTGA 319044 28 100.0 32 ............................ GACATCTTCCAACCCGTTCGTCCCTCCGGAAG 318984 28 100.0 32 ............................ GGCGAAGCGTGCCGGGAACCGCGTATCGGTTT 318924 28 100.0 32 ............................ AGTATAAAGGGATCGCTATGAAAGCGCCAGAC 318864 28 100.0 32 ............................ ATGCTGGTGGATAACCAGGAGCCGAATGAATC 318804 28 100.0 32 ............................ TTACCGTATCCGCCCTTTTTCACACCACAGTG 318744 28 100.0 32 ............................ TATGGGCTGGAACAGCGACTGCGCGACGCGTT 318684 28 100.0 32 ............................ GTGCATGTTGCCCAGTCCTATGGGCTGGAACA 318624 28 100.0 32 ............................ CGAGTCAAAGACGGCGTCAACCCTGATGACCT 318564 28 100.0 32 ............................ GGACGGATACACCTGGTGACATAGACAGAAAT 318504 28 100.0 32 ............................ AGAACCTATCACTCTTTTGAACCAGTCAATGA 318444 28 100.0 32 ............................ AGTCCGGGCAAAACTTGGTTACCGGCTCGGGT 318384 28 100.0 32 ............................ ATTTTGAATTGATATGTCAAAAATCAAAGCAA 318324 28 100.0 32 ............................ AAGAGAGATATCCATGCCCGGGCGCTTAAACT 318264 28 100.0 32 ............................ AGAGAATGAGGGAGCGGGTTTTCGGAGAAATT 318204 28 100.0 32 ............................ CCCCTCAATCGGTGATTCAATCGGGTCTTCCA 318144 28 100.0 32 ............................ TCATTTTGCAGATATGATTGTATTAATATCAT 318084 28 100.0 32 ............................ ACTTAGTAGTGACTTCGCTACGCTTTACGCCA 318024 28 100.0 32 ............................ TTGATGACCGCCATCACACCGCGTTCGATAGC 317964 28 100.0 32 ............................ GGCTGCAGTGCCAGCGCATGCACCAGGTTCCC 317904 28 100.0 32 ............................ AATACTAACGAAAGCCTGTTCCCGCAGCGTAT 317844 28 100.0 32 ............................ TGTGAGCGTGACTATCGTTGGTTGATGTTAGA 317784 28 100.0 32 ............................ AGCATCAAGAAACGTGGCCGCACCGCCAGCGC 317724 28 100.0 32 ............................ TGAGCTGCTGGAGCTGGGGCGACTGGAATATC 317664 28 100.0 32 ............................ AAAGTCTTCCGGGAGTTCTGACCAATAACAAC 317604 28 100.0 31 ............................ AGCAAAGAAAGGATGAATGGCATGGCGTACT 317545 28 100.0 32 ............................ ATGCACAGATGGCGGCGTGATAAATGGGAAAT 317485 28 100.0 32 ............................ AGACAGTCCTATACGGCCGCCTAACGATGCCT 317425 28 100.0 32 ............................ GGCAATGCCTGCAACTGTGCCTGCAGCATGTC 317365 28 100.0 32 ............................ GGCAGCATCATGGATACCAGCGGAAACTCTAA 317305 28 100.0 32 ............................ TCTGGTGCTGGATTGTTTTAATTGCGTCGAAA 317245 28 100.0 32 ............................ ATGATGCTCAACACTGCATCGTAATGATGAAC 317185 28 100.0 31 ............................ AGGTAAAAAATCCGTTCCCTGTTTTCTCTGT 317126 28 100.0 32 ............................ GCGTTGCACGGATTGAGAGCGCTGCTGCTCAG 317066 28 100.0 32 ............................ AGAAAACCGGAACCACATGGCGCAAGCGTGAT 317006 28 92.9 32 ...........AG............... TGATGGTATGATTACGAATCGGTTCAGAATGA 316946 28 92.9 32 ...........AG............... TATGGCGGCGTTATCCGGGTTCCGGCTGCCGT 316886 28 92.9 32 ...........AG............... CCAGATTCGGGCAAAAACTCGCCACGGACGGG 316826 28 100.0 32 ............................ AATGGCTGAATCATTTGTGGCGATTTTGCTGC 316766 28 92.9 33 ...........AG............... ATCAATGACTTTTACGCCGCGCTCAGTGACTTC 316705 28 92.9 32 ...........AG............... ACTTGCGGCAATCAATCCGCGACATCCTGCTA 316645 28 92.9 32 ...........AG............... TAGCCCTAATGCATTTTCGTTCTCCGGCCCGA 316585 28 92.9 32 ...........AG............... GTTTATGTCGATGATTGACTGGTGCGAGCGCA 316525 28 92.9 0 ............G.G............. | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAGGTACCGGTACCAAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAATACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCACGCAATGATACGCAGGCTAATAGTTCACCAGAAACATGTAATACACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTTCTTATTTTCATACCCTTTTTTTCAGCCGCTATTTTCGATACTGAAAAATCAATCAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : ACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTCGACGGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACGCCCGGGAAAGGGCAACCTTTCAGAACGACGTCCAATCACTATTGCTACCTGCTGCCGCGGCGGCCCGCTTTTCCGGCAGCGCCGGAGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 328996-330823 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWM01000001.1 Dickeya zeae MS1 contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 328996 28 100.0 32 ............................ ACTGAAATTCCCTGTCTGCGCGTTGACGGCGT 329056 28 100.0 32 ............................ ACCACAGCGACAATCCGTGCCTTTATCGATGA 329116 28 100.0 32 ............................ GATTCGAATCTGATGTTTGTCCCTTCGGGGAT 329176 28 100.0 32 ............................ AACATGCAAGCCGCATATAACGCCGGGCGCTA 329236 28 100.0 32 ............................ ACGGCCAGCGGGAGCATAACGCCGATCGGCTG 329296 28 100.0 32 ............................ CATCGCTGCTGTGATTTCACCATCGCAGATAC 329356 28 100.0 32 ............................ CAAGTCCGACGACGAATGCCTTATTAATACTT 329416 28 100.0 32 ............................ ATCAGATGCAATATACCAGTAGCTAAATGGGT 329476 28 100.0 33 ............................ AAAGGGCCGCCACTGGAGGCTCCAGTATAAAGG 329537 28 100.0 32 ............................ TGAACAACATGGAATTTCCGTCAGCCAATGTT 329597 28 100.0 32 ............................ AGATCGGTCAGTTTTTGGCGGATGAACCCAGG 329657 28 100.0 32 ............................ TGCACAAGCAGGTTTCACGATTCCACCTGGCC 329717 28 100.0 32 ............................ CGGATCAGGTTCAGCAACAGGCGCATGATTTC 329777 28 100.0 32 ............................ AATAGAAAATGAATGCGGTGAAATGACAGTGA 329837 28 100.0 32 ............................ ACGCTCGAAATGCTCAACGGCGCGGCCGATAT 329897 28 100.0 32 ............................ CGGGACCGTCAGAGTTGTTACCGGCACAAAGC 329957 28 100.0 32 ............................ ACGCGGACCAGCATGGGATACTGATGATCCGC 330017 28 100.0 32 ............................ AAGCAAGAGCAATCGCTATTAGCTAATAAAGA 330077 28 100.0 32 ............................ AGTACTGGGCCGGGTGCTGCCACGGGTAATCC 330137 28 100.0 32 ............................ TTGTAGAAGTTCCACGTCATGACTCGTTTAAA 330197 28 100.0 32 ............................ AGAGAAAACCACAACACTGGAGCGCACGCCAT 330257 28 100.0 31 ............................ CAATCCCCCATACTCAAACGGGTCACAATCG 330316 28 100.0 31 ............................ GCATTCCCCCACCCAGCCTTGCTGAATGAAT 330375 28 100.0 32 ............................ ATTACCGGAGCGCAATAGAGATAATAATGCAG 330435 28 100.0 32 ............................ CGGTTATCGCTCCTGCACATATCGCAGCCGAC 330495 28 100.0 32 ............................ TACAGCGGCCGCCCCTGGCCGTTGATTGACGG 330555 28 100.0 32 ............................ AGTGACGTGTCCAGGGAAAACAATCTCTATTG 330615 28 100.0 32 ............................ GGTAAGCGCGAGAAAGTGCAGGCGTTGCGCGG 330675 28 100.0 32 ............................ TCGACGCGGCCTCCATATCAGGTGAAAAAATT 330735 28 100.0 32 ............................ CGGATAAAATCGAAGATAAATTCGATTCGGTT 330795 27 85.7 0 ...........T...........-..CG | GG [330816] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTACCAACGGGTGCGCAGTACCGCACCGTACGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTACGCCGCCGTGCTGTGAGCAAGGGCTGGCTGACCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCACCGGGGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCTGCCAGAAAAAAGGGTTTTTTCGGGGAAACGGCGATTTTTCTTTAACAATCAGACGATAAGCGATTATTCGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGTAGCACCCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGGTGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATGAGATACACACCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 337280-335869 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWM01000001.1 Dickeya zeae MS1 contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 337279 28 100.0 32 ............................ TGTGCTGCTCAGTGCTGACGATATAAAAAGAC 337219 28 100.0 32 ............................ AAACAGATTTTGCCGCAGCGACCAGATTAAAA 337159 28 100.0 32 ............................ AAAGTCGGTTGATATTTCTGTCGCGATTGGTG 337099 28 100.0 32 ............................ ACTGAGATTTTTGGCGGCCATATCATCGCCGC 337039 28 100.0 32 ............................ AACGCGCTCGGTAACGTTCATAACGAGGTGCG 336979 28 100.0 32 ............................ TGATTGCTGGGCCAGCAGGTTGAGCAGGTACT 336919 28 100.0 32 ............................ ACTGAGACACTGTCACATGGGAGACCTTGATT 336859 28 100.0 32 ............................ TATACGGCGGTGAGAGTCCGTTCTTTTGGTGG 336799 28 100.0 32 ............................ GGTAATGTCCGCATCCAACAGCTTGCCGGTTT 336739 28 100.0 33 ............................ CGACATTGTTCGGGGTGTGACCGCTTGATGCGT 336678 28 100.0 32 ............................ TGGATGCGTTGCAAATCCCGGCCCCGGCGATC 336618 28 100.0 33 ............................ ACGAAATTGATTGACGAGCTGACAATGTTCGTC 336557 28 100.0 32 ............................ ACGGGTCCCCAGCATGCGCGCCCATGTACGTC 336497 28 100.0 32 ............................ AGTATGACGTCGGCTTCCGGCATTGCCACCAG 336437 28 100.0 32 ............................ GCTGTGTAATTGCGACCCGGTAGCGTGATTTC 336377 28 100.0 32 ............................ GGAGAGCGGCGCGCATGTGACTTTCGTCCTAC 336317 28 100.0 32 ............................ GGTGCTGCTGAAAGCCGAACGATTCAGGCCGT 336257 28 96.4 32 ...........T................ TGTGCATGCTCGTGCTGTCAGCCCGGTTATCT 336197 28 100.0 32 ............................ GTAAACTGAACACCCGTACCTTTGATGGGCTG 336137 28 96.4 32 ...........T................ ATATTGAGCTGCCCATCTACCATTTGCCACGT 336077 28 96.4 32 ...........T................ TACGCGCAGCATAGATTTAATATTCCCGATGG 336017 28 96.4 33 ...........T................ AACAACCCAGACAAACGACGCCGAGACCTCGAC 335956 28 96.4 32 ...........T................ ATTAAGAAGGTCACTATTTTATTTGTGATGTC 335896 27 78.6 0 ...........T.C.......G.-..CG | G [335873] ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGTTGGTTTTCACCCATTCCACCTTCACACCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAAAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCCAAAACATGAATTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCGCCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCGCCCCCAACATAAATAAGGCCACAGCAAAATCCTTGCTGTTTACCAACAGCCCCAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGACATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATACCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //