Array 1 623-1516 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQFW01000019.1 Neisseria meningitidis strain M29083 M29083_CHA3757A49_cleaned_ctg_29211, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       623	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA	
       689	    36	 100.0	    30	....................................	TATCATGATGAGCATATTTATGAAGAGGTA	
       755	    36	 100.0	    30	....................................	CTGGAAGACTGGTAAGAAACGAGATGCACA	
       821	    36	 100.0	    30	....................................	CGATTTACCACCCATAAAACCACCTCAAAA	
       887	    36	 100.0	    30	....................................	AGACTTAGCACGTTTAACTTGCTTAACAAG	
       953	    36	 100.0	    30	....................................	CAAAAACTTTTTAGGGGGGTCGAAAAATAC	
      1019	    36	 100.0	    30	....................................	CAAAGCTATAAACACGTTTATCTGTTGTTA	
      1085	    36	 100.0	    30	....................................	ATGGGGTATGCAATTACATCGCTTGGGTTT	
      1151	    36	 100.0	    30	....................................	AAATTATACCAATGGCGAAAATCTCGGGCG	
      1217	    36	 100.0	    30	....................................	GCTCAGTTGGAACAATGAATACATCTTGAA	
      1283	    36	 100.0	    30	....................................	ATAGGTTCTATTAATACGTCTTTCGTCTTC	
      1349	    36	 100.0	    30	....................................	GCCGCAAAAGTTCAGTGGCTCGTGTATTCC	
      1415	    36	 100.0	    30	....................................	CAGATTTTGCACGGCTTGGCGAAGAGGTGG	
      1481	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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