Array 1 4036854-4036216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010167.1 Escherichia coli strain H3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4036853 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 4036792 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 4036731 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4036670 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 4036609 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4036548 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4036488 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 4036427 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 4036366 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 4036305 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4036244 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4063863-4062553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010167.1 Escherichia coli strain H3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4063862 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 4063801 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 4063740 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 4063679 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 4063618 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 4063557 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 4063496 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 4063435 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 4063374 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 4063313 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 4063252 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 4063191 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 4063130 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 4063069 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 4063008 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 4062947 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 4062886 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 4062825 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 4062764 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 4062703 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 4062642 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 4062581 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //