Array 1 112416-116918 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTMG01000019.1 Candidatus Methanoperedens sp. BLZ2 CMPBLZ2contig_403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 112416 37 100.0 36 ..................................... AAAAGATGTACCACTTTCTTTTTATGATCTTCAACG 112489 37 100.0 35 ..................................... GTTTTGCTTGTACTTGTCGGGGATGATGCTGTATC 112561 37 100.0 37 ..................................... ATACCCACGATCTACAAATTCTTTTCCGTAGCATTTA 112635 37 100.0 36 ..................................... GATATATAATTATCTCCATGCGTAAGGAATTGTGAA 112708 37 100.0 33 ..................................... ACTTCTTTTGAATACATTATTATTGTGAATGCG 112778 37 100.0 36 ..................................... CTTTACTGAGCAACCACGATGCGGGCATTCTCCATT 112851 37 100.0 35 ..................................... GATATTATGTGTGTAAACACTTCTTTAGATCTTTT 112923 37 100.0 37 ..................................... ATTTCTTCTTGGCTACCTTCTTCTACCAGCCAATAAC 112997 37 100.0 36 ..................................... TTTCCCGCCTCATAGCTTGATTTCACTAGCTGTTTC 113070 37 100.0 37 ..................................... CTAGCTGTTTCAAGATGTATGGGATAGCCAAAACTAA 113144 37 100.0 37 ..................................... TACATCATCGGATATGCACAATATCGCGCAAGATCCA 113218 37 100.0 35 ..................................... CAAATTGGCTTCCTGTGCCAACATCTTGAACTACC 113290 37 100.0 37 ..................................... GATCGAGTTTCTCTTTGCGTTTCAGCATGATTTTCTT 113364 37 100.0 36 ..................................... GAGTACGCAGGTTGAATCGACGTTCATTTGCGGCCA 113437 37 100.0 37 ..................................... CTCAGAATTGGAATCCATGCGCCATTTGTGAATTTTG 113511 37 100.0 35 ..................................... TGAACGCCTCGACTCTTGCCGCAAGATCTCTCCGG 113583 37 100.0 36 ..................................... TAACAATACACCCAATCAGCAGGATGAACATTTAAG 113656 37 100.0 38 ..................................... AGCACCGTTGAGTTACCTGGAATTGCCCTCTCGATTTA 113731 37 100.0 35 ..................................... ACGGTGAGCTTAGATACAACGGTAACACGCCCAAC 113803 37 100.0 35 ..................................... TTGATTGTACTTTCTTTAAGTCTTTTGATGTTATT 113875 37 100.0 35 ..................................... GGTCTTTTTGGGAAGATTTGTCTTTGATATGACAG 113947 37 100.0 37 ..................................... TTGGGTAACTGCCTGAAGACCTGACCCAGGAAATACG 114021 37 100.0 38 ..................................... TATTGTCACCTTTAGTTTTTCCTTCCTGTTTTTGTTCT 114096 37 100.0 36 ..................................... GAAAGATTTGTGGCTGAGGACATTGTTTTTGACATA 114169 37 100.0 35 ..................................... ATATTGCTCATAATTTATTCTCCTTGTTTGTGCTT 114241 37 100.0 38 ..................................... GATAGCTTTGAAATGTCCTTATCATATGTGTACTCAGT 114316 37 100.0 34 ..................................... TACATTCTCGTTGAGCTGGGTTCAATACGCTGCA 114387 37 100.0 36 ..................................... AGATTTCAAGGACCAGAAACTGAGAATTTTGATGGA 114460 37 100.0 38 ..................................... GGGGCAAGTATATTGTGTTTTTGTGAATGCAGCCGGAG 114535 37 100.0 36 ..................................... TGGAGGAACCGGAGGCGCTCATGATGATAGCGCACA 114608 37 100.0 37 ..................................... ATTGTATGACAATTATGACACAATAAAATTAAAGATG 114682 37 100.0 36 ..................................... AAAATTATAATTGTTTGTAAAGACAAATATGTAAGA 114755 37 100.0 35 ..................................... TCCGAATCCGGGGTTTTGAGTGCCCGGGCCAGAAA 114827 37 100.0 36 ..................................... TGCTCTTTTTCTTACAATGGTCTCTTCTTGATTGCA 114900 37 100.0 38 ..................................... TGTCAGTCTTGTTCATAAATCATCAATCCTCAGTGACT 114975 37 100.0 36 ..................................... GCAGGCTTCCCACCAGTCCCACCAAAACGATTGATG 115048 37 100.0 38 ..................................... TGGAAGTGTCCACACTGTGCAAGAGTCAAGAAATATCG 115123 37 100.0 37 ..................................... CTGCTGAATGATTGGTACTTGCTGGAAGAGAATCATT 115197 37 100.0 37 ..................................... TGGATAGATAATCCTTGCTTGATATAGTGGTTTTTAC 115271 37 100.0 37 ..................................... TCATATATATCAGAACATTCTCCGCATGAAATATTTT 115345 37 100.0 36 ..................................... AGGATGCTCCCGGATCTCTGACCTGGACCATGAACA 115418 37 100.0 35 ..................................... ATGACCATATCGAGATAGAGGAGCTCAGGAGAACA 115490 37 100.0 36 ..................................... TCTAAACCCATAGCAGATAGGCGATTATCACTTATA 115563 37 100.0 36 ..................................... TTGGAATCGCGCTAAAAGCGCTGGAATTCTAAGGAA 115636 37 100.0 38 ..................................... GACCGCGATTGCGTTTCGGGCAGGCGCGCAATATGTAT 115711 37 100.0 37 ..................................... ATGGGCTTGATTATTTCGTCCTGCACTTCCATTTGTG 115785 37 100.0 36 ..................................... GCGGGTGCTTTTTGCCAAAATATGGCTCACCCGTAT 115858 37 100.0 38 ..................................... GGCCAAAGTAATAGCCTAATACGATCATGAGCGGCTCA 115933 37 100.0 35 ..................................... CCAGAACATAATCTGGATGCACGGGTCACAAAGAC 116005 37 100.0 36 ..................................... TTATGTTCCCCAGCATGTTCATATTCATAGCAACGA 116078 37 100.0 37 ..................................... GCATGTCCTGACACAGAGTCTTGAACTCACCAGATGA 116152 37 100.0 37 ..................................... CGGATGGCATAATACGGGTTTGACCATGTTTCAGCCA 116226 37 100.0 37 ..................................... ATGAGCAGTTGTACAGGCAGGGACTGGGTGGAAGAAA 116300 37 100.0 37 ..................................... TTGATGAGATTTTCTTGTGTGTAAGGAATGCGCTGTA 116374 37 100.0 37 ..................................... TGGCCGAGGATGGGCAGGCTTACGATCCTGCAAAGTT 116448 37 100.0 36 ..................................... ATGTTTCAAAACCAAAAATTGTATCAAGTAAAGTTC 116521 37 100.0 34 ..................................... TGCCTTGATCATCTCGGTAGGCTTTTCCAGCTCT 116592 37 100.0 36 ..................................... GACCTATGATAGGTCAATAGGTCTAAATATTGGATA 116665 37 100.0 36 ..................................... GTAGCTATATCTCCAACAAGGTCTTTTCCTTCCTCA 116738 37 100.0 35 ..................................... AGATAACTTCTTGTCTTCGGCGCTTTAATTCCCGG 116810 37 100.0 35 ..................................... GTTTCGCACTACCGCCATGCAGAGCATCGTCATGA 116882 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ====================================== ================== 62 37 100.0 36 ATTTCAGAGCGCTTCCTCGCAAAATGAGGATTGAAAC # Left flank : AGCTCAGGTTATCCATGACCTTGCTGTGGAGGATATTAAAACAGGTCTTTACGGTATGGTGGATACGACGATCATAATGAAAAGTGGAGAGGTAGTTCCAGTAGATGTTAAATATACAAATGCAGAGAGCGTTAGAACAAATTGGAAAAAACAATTAATAGCTTATGCCATCCTCCTGGACTCCAGATTTGAGACAATAGTAAGAAGAGGATTTGTTTATTTACCCGCAAAACACCGGCAAATACAGGTTAATATTCCCGATGAAGCCAAGGCCGTATTAAAACAGGATATAATCAGGATAAAAGCTCTGATCGATAGCGAAAAGATGCCACATGTTTCGAAGGGAAATCAGTGTAGTTACTGCGAGATGAAGAAATTCTGTACCTGAGATTGTGCAGACCTTGATAAATACCCTTACGACTTTTAGACCTTCACAAATGACCCTGGAATTCGAGGCAATAGGAAGCTTTAAACCTCAATAAAGCCTTCTTTTATTGGCT # Right flank : GACACTACATCCAGTCGTTTTCCAAAAAAAAGCGATCAGGCTTTTCTGAAAAAACCCTACCCTCTTAAAAAATAGATTTTTATATCCTCAAAAACATAAAAATGAAAATGTATTACCCTTCTTTTTTGCTTTTAAGAATTTCTAAACCAGTTACTTTTGAAATTTCATCAAATCTCTTATCTGTCGAGGCAATCTTGTCTGCACCATTTGTCACAGCAATCCCCGCTATAAGTACATCAAGAGCATTAACTGGTTTTCCTATAGTCAAGAGGCCTGCCATTATTTCACTTGATTTTTCTGCAGCCTTAAAATCAAAATCTAAAACCGGTGTTTCAGAAAAAAATCTTCTGAAAAATCTTTCCTCTTTTTTGACTTTTTTATGTTTAACACCGGACATTATTTCGTGAAATGTTATAACTGTAGTTGCAATATCTGAATCAAAATCAAGGGCAATATCAAGGTCATCAATGTCCTTAATTTCAAAAGCTCCCAGTGTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAGAGCGCTTCCTCGCAAAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 23929-22437 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTMG01000056.1 Candidatus Methanoperedens sp. BLZ2 CMPBLZ2contig_540, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23928 28 100.0 33 ............................ GTGGAAACACCACTTTTGATATATATGCTGATG 23867 28 100.0 33 ............................ GACCGCAAAGGCAACAGATACAAAATATCTAAA 23806 28 100.0 33 ............................ GGGTAACATGTGATGAATGTACATATTCAGCAA 23745 28 100.0 33 ............................ GCCAGGGAACATCTCCCGGCCACATCTTGAAGT 23684 28 100.0 33 ............................ GTGCTGCGGGTTGTGTTGCTCCGCCCGATCCGA 23623 28 100.0 33 ............................ GGAAATCACATTCTTTGAAATGCCTTTGAGAAA 23562 28 100.0 33 ............................ GTATTGGAAAAAAGGGGCAACGGTAGGAACTAT 23501 28 100.0 33 ............................ GGGACGGATCTATAAAATCGCCTGGCTGCGTCA 23440 28 100.0 33 ............................ GAGCAGCAAAGCGATATCTGGACTCTGTGGGGT 23379 28 100.0 33 ............................ GGGCAGGAATACATGACAGTTGGCAATACTGTA 23318 28 100.0 33 ............................ GGAAAAGATTAAAAGATGTATTGATTTGCCAGT 23257 28 100.0 33 ............................ GAGATTGAGGTACGTGAAAATCCGTCTATTGTG 23196 28 100.0 33 ............................ GTCCATTTATAGGATGTATACAAATTTGTTACA 23135 28 100.0 33 ............................ GTTAAAGCCACAACCACGCGCCAGGCAGAAATG 23074 28 100.0 33 ............................ GCGCACATGGTTTTGATGTTCAGGGGGTGGAAT 23013 28 100.0 33 ............................ GGTCGTGGTAGTGAACTACGCATCTGTTATCTT 22952 28 100.0 33 ............................ GTCCTGGGCTGGATCTCGAACACAGAGGGCAAG 22891 28 100.0 33 ............................ GGCGATAATCCGATCGTAACCCATACCTTCCTG 22830 28 100.0 33 ............................ GAAGGGCGCGAAAACCCTCAAGTTCTTTGATGA 22769 28 100.0 33 ............................ GACCATACAGATGTGCGTACTCCTGGGTGTAGA 22708 28 100.0 33 ............................ GGTATGCTTGAGAGATTAAAGGAACAAGAAGAT 22647 28 100.0 33 ............................ GAGCAATTCAGCAACGCATTACAGGCTTGCAGT 22586 28 100.0 33 ............................ GAAAATACAGTATCTTATATTTTGCTTCGTTGA 22525 28 100.0 33 ............................ GACAGAGTTATATCTTGTCTCTCTTTACCACAC 22464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 GAGTTCCCCACCTGCGTGGGGATGAACC # Left flank : GCATTTCTCCACCAGAAGACGCGCCAGATGCTTTGCAACCAGCGATTCCAGTTGAAGAGGGGATTGGTGATGCTGGTCATCGTAACTGAAAATGCGCCGCCCAGTCTTCGAGGTAGATTGGCTGTATGGATGCTGGAAATTCGCGCTGGTGTATATGTTGGAGATTTTTCTTCGAAGGTAAGGGAAATGATCTGGAAAAATGTTGAAAAGGGACTGGATGGCGGAAGCGCGATAATGGCATGGAGCGCACAAAATGAAGCCGGTTATGATTTTATGACTATAGGAGATAACAGGCGTATGCCAGTCGATATGGTTGGTGTGAAACTGGTGTCTTTCTTGCCGAATGGCTGATATATTTTGTAGGATATACTGTTGGTGATAATATTATGATAATTAAGGAACATAAATATAATTTAAAAATTAATATTATTACACAATATTATTTATTTGAGGAGGAGAGCGGTAAGAGATTTCCGGTTTAATAATATAAATAGTAAAGA # Right flank : CTTAATGATAGACAGGTCAGGGCAGTGATGTATGTTAAGGAAAAAGGGAGGATTACAAATAAGGAATATAGGGGGATGTTTGATATCACAGATAGAATGGCGCTCATCGATCTGTCTGATATTTGCGCGAAGAATATATTTGAAAGGATAGGTAAAACAGGGAGAAATATAGAATATGTTTTATCTCGAAATAAACTCGAAAAACCCGAAATTGATAAGAATAATTGATGAGGAAAGAGAGGCGGTAATGACTGACAATAAAATCAAACATATCAACCAACCTGGCGACTACTACTTTTGCTCCCTTTGCGCCGCCTGGCACCTCTGCACAAACGATCCTTCATCCAATGGCAATCAGCATTTATCACATCTTGAGGAGAATGAGACAAACTCCCCAGCCTCAAAATATTTCTTCTGCTACCTCTGCAGCAAATGGCATACAGACGCCAGAAAAGAGCATCTCCAATACCGTCTGCATATCAAGCGAGATCCCAACATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACCTGCGTGGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACATGCGTGGGGATGAACC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22038-16126 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTMG01000023.1 Candidatus Methanoperedens sp. BLZ2 CMPBLZ2contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 22037 37 100.0 36 ..................................... ATCCTTTTCCAGATTGTAGTATCTCAAAAATAGATG 21964 37 100.0 44 ..................................... ACGATGATGCCCTATTTTTTGGATATACTGGAAGCAGAAACGTA 21883 37 100.0 36 ..................................... TTAATATTTTCTGGATAATATAATTTTGAATCTAAT 21810 37 100.0 37 ..................................... TCTCCTACCTTTCCGCTTTAAAATTATGAGGTGAAAT 21736 37 100.0 34 ..................................... TAATGAAAAAATAATGAAAAATGGGGATAATACC 21665 37 100.0 36 ..................................... CTCCAACGATCAAAATAGATTTCCCTACAGTATAAG 21592 37 100.0 34 ..................................... TCTTTTCTACGTGTTGCGAATCTTCCGAATTGAA 21521 37 100.0 35 ..................................... TAATATTCAACTGCATAAATGAGAAGTTCCCTATA 21449 37 100.0 37 ..................................... TAATATTCAACTGCATAAATGAGAAGTTCCCTATAGT 21375 37 100.0 34 ..................................... AAAGCATCATTCATAGATGCCCTAATTGTATAAG 21304 37 100.0 37 ..................................... CCAACATAAGCCTTATAGTTGTTTGCCATCTTGTCAG 21230 37 100.0 35 ..................................... AACTATCTTATTTATTTTTTATGGGAATCAAACCT 21158 37 100.0 35 ..................................... ATATTTCTGGGGATGAAAACAAGAAGCGGAAGCAT 21086 37 100.0 36 ..................................... GGACTAAATACTGCTTGTACTATCTGGAAAACAAGA 21013 37 100.0 36 ..................................... CGCTTTCAGATACCGCTGATGCTGTGATAGAAGTCA 20940 37 100.0 34 ..................................... TGATCTTCCGGGATAGTCTCTTTTTCATTATTCA 20869 37 100.0 37 ..................................... AAAGCTGCCGTATTCGCTGTAATGACTGTTTCAAATT 20795 37 100.0 34 ..................................... AACTCTTCATCCTTCATGCACATCATGAACCCTT 20724 37 100.0 34 ..................................... TACATGGCGATGTTAGAGCATGCGTGAATTGTAG 20653 37 100.0 35 ..................................... CAGGTGTAAGCGCTGCGGGGAATGTTGCAGATATA 20581 37 100.0 36 ..................................... CCAAGCTGGTTATTTTCCGTACCTCTATCCCGGAAG 20508 37 100.0 35 ..................................... AGGATATTGTATAATTCTAATGCAGCCATAACAAA 20436 37 100.0 34 ..................................... ACAATAGAAATTATTTTTTGGATCTGGCTATCCA 20365 37 100.0 36 ..................................... TGCAAACAGTGCTTCCGTTGTTGAATCTTCAATCTA 20292 37 100.0 36 ..................................... CCAAAGAAAAATAGAGATGATTAAAATGGCTAAAGG 20219 37 100.0 37 ..................................... AAAATTAATTTTCGTAATAACCGTTACGGTGATCTCT 20145 37 100.0 35 ..................................... CCGCCACAGTCAAGACTGGTTGACATCAATCGTTA 20073 37 100.0 37 ..................................... ATCCGACGCTGCTAAGCCCCGCGACACCACCAAAAAT 19999 37 100.0 35 ..................................... TCACAACTTTTCAGCAGAGATATGAAGGTGTAATC 19927 37 100.0 35 ..................................... TGTCTTAATTCACCCTGCGAACGCGTAATTTTGTA 19855 37 100.0 34 ..................................... TGAAGATATGTTCGCCCTGCTGCAAGTATCTCAG 19784 37 100.0 34 ..................................... TTGTTTTTCTTAATCTATTATTTAAGTTAATATA 19713 37 100.0 35 ..................................... TTTTCATGAATTCACAGACGCGACTGCTACCTGGG 19641 37 100.0 35 ..................................... GGAAATCCCTTCAATCTTGCAGCTCCAGGAACGAA 19569 37 100.0 35 ..................................... TGTGCCATTAAAAATGTCTCCAAAGGCTTTTTTTG 19497 37 100.0 34 ..................................... TTAATATGGCTCCGAATAACAGAACAATAATAAA 19426 37 100.0 35 ..................................... AGATAGTGACAAAATGCTCACCACATCGAAGGCAA 19354 37 100.0 36 ..................................... AACTCATACCATGTATGGCTGAATAATATGTTGATA 19281 37 100.0 35 ..................................... TTTCCAAGCACAGCAGCAATGATGATCGCAATTGC 19209 37 100.0 35 ..................................... AGATAGTGACAAAATGCTCACCACATCGAAGGCAA 19137 37 100.0 36 ..................................... ACTTCTCCTGAAAAATGAGGTTATAACTCTCCAAAT 19064 37 100.0 35 ..................................... ATTCTACAGGATCCCGTCCAAGCCTGTCCAGACGA 18992 37 100.0 35 ..................................... TCATCTCATCATCGTCATCAAATACAGGAGAAAAG 18920 37 100.0 34 ..................................... CAAGGGCTTTTTTGGTGTCGATGAGCCAGAGAGT 18849 37 100.0 35 ..................................... CAGTGATCGAGGAGTGGGCGTAGATGGCAATCTAT 18777 37 100.0 34 ..................................... ATTCTACAGGATCCCGTCCAAGCCTGTCCAGACG 18706 37 100.0 37 ..................................... AGATAATTGATTGCTGCGTGCGCCTGTGTCGTCATGT 18632 37 100.0 36 ..................................... CACCAGCAAAGGCTGCAACATTTGTAACGGTCAATT 18559 37 100.0 36 ..................................... GATAATATTCGGGAAGGGATGCTCGCTGCGAGGAAA 18486 37 100.0 34 ..................................... TGACTTTGAGGTCTATCTCCTTCCGATACTTTTC 18415 37 100.0 37 ..................................... TTGCTTTAAGTCCTATGGACTATGTTCAGTGAACACA 18341 37 100.0 36 ..................................... TAGGAGATTAATATGCCCACACTTCCACTAACAATA 18268 37 100.0 35 ..................................... TAATTAAATACTGCTGGTACAACTGAGATAATACT 18196 37 100.0 37 ..................................... CCAAATAACGCTTGCTCAGAATCAACAAATTCATCTT 18122 37 100.0 35 ..................................... TTGTTTGCTCTGAGTATGTCGTTAGAATGAGTTGA 18050 37 100.0 34 ..................................... CATACACCAAAGGTAAAAAGAGAGTTGAACTTAG 17979 37 100.0 35 ..................................... TGGAGCGAATAAGTCCTTAAGGATAGAGTGTTCGG 17907 37 100.0 35 ..................................... ATTCGGTCCGGAGCATGGCAGGGCGGAAGTAGTGG 17835 37 100.0 37 ..................................... TTAAGCCTTCTTTTCGCTAAAGAATAGCTATTATAGT 17761 37 100.0 35 ..................................... TATAAAGAAACTATCTCTTTCTCTCTCTCTCTCTC 17689 37 100.0 37 ..................................... TATCATCCGACAAAGCAGTCGAACCAACAAGCATATA 17615 37 100.0 35 ..................................... ACTTTAGTTGATACTGTTGGTAGAGATATATCTTT 17543 37 100.0 37 ..................................... CATAGCGGACGGATATATAGCTGACGCAGTAAATGCT 17469 37 100.0 36 ..................................... ATGTTTTTTGGCTAATACCAAAACCGGATAAACATT 17396 37 100.0 37 ..................................... GGTGGTACTTTGTGTTGTACTATTAAAGGTTATTGCT 17322 37 100.0 35 ..................................... TCTATTATTGATTCAGCAAGACATACTGTTATAGA 17250 37 100.0 37 ..................................... AATACAGCTTCGAGAACTCTATCATATTCTTTCTCAG 17176 37 100.0 36 ..................................... TAAAAAGAATATCTGATGATGACTGGTGGGCGTTTG 17103 37 100.0 35 ..................................... TAGTAACAGCTCTTGGCGCAGCAGTAAAAGCTATT 17031 37 100.0 35 ..................................... TTCAGACAGGGCGCAGATGGATACTGTACATGCAC 16959 37 100.0 35 ..................................... TACATAACTCAACTCCCTCACGGCAAGAAGAGTAC 16887 37 100.0 35 ..................................... TAATTTATATGTTTTCCATGATACGGGGGTTTTCC 16815 37 100.0 36 ..................................... TCTTGTTGAAAGACCGGTTCAGGTAAAAGTTACTGT 16742 37 94.6 35 ....A.............C.................. CTGGTGCAACTGCTCCAGTAAATGACTGTGAATTC 16670 37 94.6 36 ....A.............C.................. GGCGTCCTATACGAGTAGGCTAAGCCTACTCTTTTT 16597 37 94.6 34 ....A.............C.................. GGATCTATTCGTTCGACGGATCGCTGCTGTTCTC 16526 37 94.6 36 ....A.............C.................. TCGTATAATTGAACGGCCAAAAAGAAATACTATAGA 16453 37 94.6 36 ....A.............C.................. TACTTACTTCTAAAGTTCTAAAGTAAGAGGAGGTGA 16380 37 94.6 34 ....A.............C.................. GTATTATGCATGTTGCCATAGTTTATCCTCTATT 16309 37 94.6 36 ....A.............C.................. TTCAGGAAGTAATAAAAGCCGAACCTGAAAATGACT 16236 37 94.6 37 ....A.............C.................. CATGGCTACAATCTGAACCCTCATCAGATCGCATCGA 16162 37 94.6 0 ....A.............C.................. | ========== ====== ====== ====== ===================================== ============================================ ================== 82 37 99.4 36 ATTCGAGAGGCACATCCATTAAAACAAGGATTGAAAC # Left flank : AAAAAGAAATAAATGTTTTCATAGCCTCAAAAAATAACCATATCAAAGGTATCGTGGACGAAGTCCTTTTCCTGGATAATGGAACTGCGGCTCCTTTTGAATATAAGTATGCCGAGTTCAAGGATACTATATTCCAGACTTATAAATTCCAGCTTGTGCTTCATGCGTTAATGATAAAAGAAAACTACAAGACCGATGTGAAAAAAGGGTTCATTTGTTTCACGAGAAGCAATAATCATATTGAAGAGATCATTTTTACAGAAAAAGACTTCAAGAAAGCAATCGAGATCATTGATGAAATCCTTGTAATTATTGATAAAGGCTTTTATCCCGGCAAGTCCAAATATAAGAATAAATGCATTGATTGCTGTTATAGCAACATCTGTGTGTGATTTTCTTGTCTTTATATACCAATCCATAATTTTGCAGCAAGAAATCCAACCGCAAAATCTAAGCCATATTAACCCTTATTTTGCCTTAAACAGGTGAAAATCTGTGGT # Right flank : TCGTGAACAGGACAATAGTGATCACTGAGTGGGTAATTCAAGAGGCACATACGGAGTTCAAAGTTGAATTTGATGGCTATCTATCCAATGTCAAGATGATAGGTGGAGGAATGGTCTGTCCACCCGGCAGAAACAGAGCGCCCGAAAGTGATGGATAGAGCCATAACCGCAAGCATGCAGGGCATGATCCTTAAAATAAAGGTCAAGAAAAGGCGACAAGTTTTCAAAAGGCAATGTGGCGATGATCCTTGAAGAGCAGAAGATCACGCAGATACTAAGTCGAAGATTGAGAGCCCGCACCTGGTTCAACGAAAGGAACCTTCACATCAGGATACCACATCTGCATGAACGTCAGCAGATGATATTTCATGAGAACAGGCAAAGGTACGGATACTATCAACAGGAATAATATCAATACCACTGCTGCGATAAGCCCGTAGGGTATCATTACTGCCCATAATAAGAAACTCCCTGAGCCCTGTCCCAGCGCTGATAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGGCACATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //