Array 1 6636-4959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHE010000111.1 Escherichia coli strain B-60 ESC_QB0128AA_AS_NODE_37_length_44472_cv_10.180449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6635 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 6574 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 6513 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 6452 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 6391 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 6329 29 96.6 32 ............T................ CAAATATATTTTGCGTTAATTATTCGAGGTAA 6268 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 6207 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 6146 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 6085 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 6024 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 5963 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 5902 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 5841 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 5780 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 5719 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 5658 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 5597 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 5536 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 5475 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 5414 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 5353 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 5292 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 5231 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 5170 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 5109 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 5048 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 4987 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33281-32337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHE010000111.1 Escherichia coli strain B-60 ESC_QB0128AA_AS_NODE_37_length_44472_cv_10.180449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33280 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 33219 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 33158 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 33097 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 33036 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 32975 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 32914 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 32853 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 32792 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 32731 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 32670 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 32609 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 32548 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 32487 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 32426 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 32365 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //