Array 1 39818-39121 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARE01000005.1 Aerococcus urinae strain ATCC 51268 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39817 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 39756 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 39695 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 39634 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 39573 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 39512 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 39451 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 39390 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 39329 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 39268 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 39207 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 39147 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60138-58769 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARE01000005.1 Aerococcus urinae strain ATCC 51268 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60137 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 60076 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 60015 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 59954 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 59893 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 59832 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 59771 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 59710 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 59649 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 59588 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 59527 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 59466 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 59405 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 59344 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 59283 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 59222 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 59161 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 59101 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 59040 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 58979 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 58918 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 58858 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 58797 28 75.9 0 ........-..C......A.T..T...TG | A [58772] ========== ====== ====== ====== ============================= ================================ ================== 23 29 96.9 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGCAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //