Array 1 2010416-2011358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012939.1 Ralstonia solanacearum strain UW163 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2010416 29 100.0 32 ............................. CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA 2010477 29 100.0 32 ............................. CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA 2010538 29 100.0 32 ............................. GCCAGACCCCACATCGCGAGAATCCCAGCCCC 2010599 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 2010660 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 2010721 29 100.0 32 ............................. GTCGGCAAGCTGCCGTTCGGCGAGGACATGTT 2010782 29 100.0 32 ............................. AGATCAAACTGTGCCATGCCCTGGGAGGTTTG 2010843 29 100.0 33 ............................. CCAACAACGAACTGGCTACTGCCATTCGTCGGC 2010905 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 2010966 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 2011027 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 2011088 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 2011149 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 2011210 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 2011271 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 2011330 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.1 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TTCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2020284-2021106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012939.1 Ralstonia solanacearum strain UW163 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2020284 29 100.0 32 ............................. CCGGTGAACAGCGGTACGCCGCCGATACGCAG 2020345 29 100.0 32 ............................. ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 2020406 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 2020467 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 2020529 29 100.0 32 ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 2020590 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 2020651 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 2020712 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 2020773 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 2020834 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 2020895 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 2020956 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 2021017 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 2021078 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.6 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //