Array 1 2129408-2125870 **** Predicted by CRISPRDetect 2.4 *** >NC_015732.1 Treponema caldarium DSM 7334, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2129407 33 100.0 35 ................................. CTAGTGAAGTATCTGCGCTCAAGGCAAAGAATGGT 2129339 33 100.0 33 ................................. TTGCGTCGATTGGAAAAACGGCGGCGGACCTTG 2129273 33 100.0 35 ................................. ATACACTCCGTATAAATCCTGCAATGCAACCAATG 2129205 33 100.0 36 ................................. TCAAGCAATTACAAAAAGCTAAATCGTTATCCTGTC 2129136 33 100.0 34 ................................. AACACTACGGACGCGGTTAACTCCAGATGGCGCC 2129069 33 100.0 33 ................................. GCAAAAGGTACAAAGTGAAGCCCAAAGAATTAC 2129003 33 100.0 34 ................................. GCAAAAGGTACAAAGTGAAGCCCAAAGAATTACA 2128936 33 100.0 34 ................................. ACATTCTTTCTGCCCCGTGGAATGCCGCTTGGTT 2128869 33 100.0 34 ................................. GCATCGATCTGCTTTGATACTGCTTGCTCGTCAG 2128802 33 100.0 35 ................................. GCAAAAAGTACAAAGTGAAGCCCAAAGAATTACAG 2128734 33 100.0 35 ................................. TAAGTAGAAAAGCAAGTCCTGTAAAGTCCATTCTT 2128666 33 100.0 34 ................................. ATCGGCAACTATGTAATACCGATACTATATATTA 2128599 33 100.0 34 ................................. GTCCGAAACTACTAAACCACGTTTCTGATAAAAA 2128532 33 100.0 35 ................................. ATCAGCTATACTTAACGTATGTATAGCATGCTATG 2128464 33 100.0 34 ................................. GCAAAAGGTACAAAGTGAAGCCCAAAGAATTACA 2128397 33 100.0 34 ................................. GCATCGATCTGCTTTGATACTGCTTGCTCGTCAG 2128330 33 100.0 35 ................................. GCAAAAAGTACAAAGTGAAGCCCAAAGAATTACAG 2128262 33 100.0 34 ................................. AGGATGCGCCGTTGATAAGCTTGAGCTATCGATG 2128195 33 100.0 35 ................................. ACTCCTTTCAGCGCCTACTATGTAGGCGCTGAACC 2128127 33 100.0 33 ................................. CCTAGGTTTGATACGATACCGCTTGCATAGCCG 2128061 33 100.0 37 ................................. CCGCAAACAAGCCTTGCGGGAATATGAGGAATATCTT 2127991 33 100.0 34 ................................. TATCGGCAAGCAAGGCAATGCTTGCCGATAAAGT 2127924 33 100.0 34 ................................. AAGCGAGGCTTGTGCATACCGACAACCGGAGCAA 2127857 33 100.0 34 ................................. CGTCAATAAGCCATAACACTCCTTCGTCGTTAAT 2127790 33 100.0 33 ................................. ATTTAAGACAATGAAGTCGTCCATATAACGTAT 2127724 33 100.0 34 ................................. GCATCGATCTGCTTTGATACTGCTTGCTCGTCAG 2127657 33 100.0 35 ................................. GCAAAAAGTACAAAGTGAAGCCCAAAGAATTACAG 2127589 33 100.0 35 ................................. TAAGTAGAAAAGCAAGTCCTGTAAAGTCCATTCTT 2127521 33 100.0 34 ................................. ATCGGCAACTATGTAATACCGATACTATATATTA 2127454 33 100.0 34 ................................. GTCCGAAACTACTAAACCACGTTTCTGATAAAAA 2127387 33 100.0 35 ................................. ATCAGCTATACTTAACGTATGTATAGCATGCTATG 2127319 33 100.0 34 ................................. GCAAAAGGTACAAAGTGAAGCCCAAAGAATTACA 2127252 33 100.0 34 ................................. GCATCGATCTGCTTTGATACTGCTTGCTCGTCAG 2127185 33 100.0 35 ................................. GCAAAAAGTACAAAGTGAAGCCCAAAGAATTACAG 2127117 33 100.0 34 ................................. AGGATGCGCCGTTGATAAGCTTGAGCTATCGATG 2127050 33 100.0 35 ................................. ACTCCTTTCAGCGCCTACTATGTAGGCGCTGAACC G [2127036] 2126981 33 100.0 33 ................................. CCTAGGTTTGATACGATACCGCTTGCATAGCCG 2126915 33 100.0 37 ................................. CCGCAAACAAGCCTTGCGGGAATATGAGGAATATCTT 2126845 33 100.0 34 ................................. TATCGGCAAGCAAGGCAATGCTTGCCGATAAAGT 2126778 33 100.0 34 ................................. AAGCGAGGCTTGTGCATACCGACAACCGGAGCAA 2126711 33 100.0 34 ................................. GCTTGCCGATAAAGTGCTAAGGGAGTGTAGGGAC 2126644 33 100.0 34 ................................. AGGATGCGCCGTTGATAAGCTTGAGCTATCGATG 2126577 33 100.0 35 ................................. ACTCCTTTCAGCGCCTACTATGTAGGCGCTGAACC 2126509 33 100.0 35 ................................. ATACACCTATGCTATGTCGTTGCGGTATAAAGGTT 2126441 33 100.0 36 ................................. AACAATTCCCTAGGTTTTACCTTATACTGTCTACAT 2126372 33 100.0 35 ................................. TTCATACATCTTAACATTTATTATTAAGGTGTATA 2126304 33 100.0 34 ................................. CATACGGTACCGTCATACTCCGCCGATACTACCG 2126237 33 100.0 35 ................................. ATAAACAAGATCAGCCGATATTACCTCAACTGTTC 2126169 33 100.0 34 ................................. CGTCAATAAGCCATAACACTCCTTCGTCGTTAAT 2126102 33 100.0 33 ................................. ATTTAAGACAATGAAGTCGTCCATATAACGTAT 2126036 33 100.0 34 ................................. ATCGGACCGGTCCTTGCATGCCGATAAAACTTTA 2125969 33 100.0 34 ................................. TTCTCAATCAATCAATCTATCAATGATTGATTGA 2125902 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 53 33 100.0 34 GTCGCTCCCCGCTCGGGGGGCGTGGATTGAAAC # Left flank : ATTTATCTTTGCTATTGCATCAGGTCCAAGCCGTTTTCGAAAATGAACCATCATGCTTGGATCAAAGGGTTTTTCATCTTTGTAAGATTCATATCCTAAAAAATATTGCAGGTAATGGTTCTCTCGTATTGTTTCTACCGTTTCTTCATCTGTTAATTGTAATTTCTCTTTTATCAATAATGATCCCAAGGCGAGCCGTACGGTCTTGGCTGTTCTTCCAATTCGTTTTGAAAAACATTTTTTATATTCAGCTTCTATCTCTTCCCATGGAATAATTGCGGCTAATCGTACCCATCGATTATCTTCTCGTAAATGTCCTCCGAAGGGTACATAAAAGTCTTCAAACTCAGGTACCTGTTCCTTTTCCTTATACATCGTTACCCCATAGTAAAGTGCACGCTTTTTAAGGCCTTACCCCTTTCTTCCGTGCACTTCTTATTGAGATTATCTCTGTATTTGCTTCTTTTGTAAAGAGTTGTTTGTTTTTCAGGAAGCCCGAC # Right flank : TCTGTAAGCTCAATTTCATTGGACTAGCGGCCCTGGTGCAACAACTGCGGCCGGAAGGCCCCTTCGACGGGAGCTACTATGTGTTCTGTGGGAAATCGAGGCGGGTACTGAAAATCCTTTATTGGGATTGTACGGGATTTTATCTATGGCAAAAACGACTTGAAAATGAACAGTTTCCCTGGCCTCGAAGTGGCGAAGAACTTGATGAAATCACTCGGCAGCATATCAGACTGTTACTCCAAGGAACTGATATCTGGAAAGTCCACAAAGCATTACCCTATCGTATTGCAGGATAAAAAGCATTAGACACAAATTCGTCGATATGCTAGACTGCGGTCATGGGAGTCGTAGCAGAATTACCCAATGATGTTGCAGCATTAAAGAACATCATTCGGGAACTTAATGCAAAATTCTTATGGACAGAAGAAAAGCTACGATCCCTTGTGCGTCGATCCTTTAGATCAAATAAAGAAAAGTATACTACTGATAGAAGAACTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 2133631-2131097 **** Predicted by CRISPRDetect 2.4 *** >NC_015732.1 Treponema caldarium DSM 7334, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2133630 33 100.0 35 ................................. TCGTAACCTTTTTACCGCTCGCCCAGCCCTTGGAC 2133562 33 100.0 35 ................................. TATCAGCAAGGCGGCCTTCACGAGTGAACAAGATC 2133494 33 100.0 36 ................................. AGCATCCCGGCGGCTATGGAACCGACCGTGGTGCCG 2133425 33 100.0 34 ................................. TTTGGATTTCAACTAATGCTAAAAATCTAAATCG 2133358 33 100.0 35 ................................. AACAAAAAATGTCACGTTAACTGTTGCCAAATATT 2133290 33 100.0 34 ................................. GTACGCCGCAAGTCGCACTCGTAGTCCTCAAGGT 2133223 33 100.0 35 ................................. TCCAAAAAATAAATCATTGCAGGATATAGAGGTAG 2133155 33 100.0 35 ................................. CTGAATAGTACCTTTCATAACGCCCTCCATTGCCC 2133087 33 100.0 35 ................................. TTTTGGATTGCCGGCCGCTGCGCCGGTAATCCAGC 2133019 33 100.0 35 ................................. CCTCTGGAAACCTTTATACTGCAACGACATAGCAC 2132951 33 100.0 34 ................................. ACAAAAAATGTCACGTTAACTGTTGCCAAATATT 2132884 33 100.0 34 ................................. ATTAACCGTACTTAACATATGTATAGTATACTAT 2132817 33 100.0 34 ................................. ATACACCTGCGCTATGTCGTTGCATTATAAAGGC 2132750 33 100.0 34 ................................. GTTGTTATCGTTAGGCATACGCCCTCCTACGCCC 2132683 33 100.0 34 ................................. GTTGTTATCGTTAGGCATACGCCCTCCTACGCCC 2132616 33 100.0 35 ................................. GCCGGTTAATTGATTGTTTAGCAATATATGATTTT 2132548 33 100.0 35 ................................. TTCATACAGTAGGTGTATACTTTTTTATACACCTG 2132480 33 100.0 34 ................................. AACCAATGCTAAAAAGCTAAATCGTTATCCCGCC 2132413 33 100.0 35 ................................. TTTTTGGATTGCCGGCCGCTGCGCCGGTAATCCAG 2132345 33 100.0 34 ................................. GAATGGGGTGGTGACTGGGACCCCAAAAACGAAT 2132278 33 100.0 33 ................................. GCAACGGAGGGATTGCTCCTCCTAAAAAACTGG 2132212 33 100.0 35 ................................. GACGGTGTCGTGATATGGACGACAGATAAGTATCA 2132144 33 100.0 35 ................................. TGGCTGTATCTTGGGCTGAGCCTGGCGCCCAGCAG 2132076 33 100.0 35 ................................. GCCCCAATGAACACGCCTGGAGCCCCGGAAGGGTT 2132008 33 100.0 36 ................................. TGGCCTTATCTATCAGCGCGTTTTCCACCACAGCAT 2131939 33 100.0 34 ................................. ACCCAGCGAGCAGCTGGGCACCATTAAAATTTCC 2131872 33 100.0 34 ................................. GCCTTTGTTGAATGAAAAAGCCTAACAACTGCTT 2131805 33 100.0 36 ................................. ACGACCACTACACGGATAATTTGCAAGGAGGAAAGT 2131736 33 100.0 34 ................................. ATTAACTGATGAACAGTTAATGGAAAAAGCAAGG 2131669 33 100.0 34 ................................. TTCCAAAAGATGTTCAGTGGGCCCGTGTGTGGGA 2131602 33 100.0 34 ................................. AATCCAGTATATAGCGACGATAATTTAGTTTTAT 2131535 33 100.0 34 ................................. ATAGATTGTGTAGGCAATATAAAGTGAAACCACG 2131468 33 100.0 34 ................................. ATCGTCTCCGTACGATGGATGGAAACTTATATAA 2131401 33 100.0 34 ................................. CCAACTCGGGTAAGGAGAGGAGAAGAGTATGCTA 2131334 33 100.0 34 ................................. GAGGTTGGGAAGGACTATTACGTCTATCTCGTCG 2131267 33 100.0 37 ................................. ATTAACTGATGAACAGTTAATGGAAAAAGCAAGGCAC 2131197 33 100.0 35 ................................. GCCGAAGCCATAAAGGTTAGGACAGACGTTGTCTT 2131129 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 100.0 35 GTCGCTCCCCGCTCGGGGGGCGTGGATTGAAAC # Left flank : TGATTATGATGGTTCTAATTACTTATGATGTTAATACTGAAACACCTGAAGGCCGTCGGCGGCTTCGACAAGTAGCAAAGGTGTGTGAAAATTATGGTCAAAGGGTACAACATTCAGTTTTTGAATGTGTCATTGATACTATGTTGTTAAAGAAAATACAACATCAACTTGCAAAAATTATCGATAAAGAAAATGATAGCATACGGTATTATTATTTGGGTGATAATTATAAATACAAAGTCGAGCATATAGGTGTTAATCATAGTTTTGATATAGAAGGACCATTGCTTTTTTAAACTGTAGTTCTTTGACATGATGAGGGAAGGATTTTCTGCGAAACCTATGCTCACATCAAAATATATATAGGTTCGCAGTTTTATGATACACTATTTAAACAATGCTGTAGAGTTTTTAGAGGTTATGAATATTACTCTTAGGTAAAAAATTAGGCATATTTACATATTTAGCGTATTATTATATAAATACCACTATATTTAGCT # Right flank : AGACCAGGAGACCCAAGAATAAATCGCAAAGGACGTCGGGCCTACTGAAAATGTCTAAAAATGATATTTCAAAACTTTTTTACGTTAAAATGGGTTTAATTTAGTATACTAAAACTTTCAAATATGATTTATGAGGTTTAAAACCAAGTAAAAATAAAAAGCGCATAAAAAGATCCCTCAGGATTTTTTCACAGTTGGTCAGCAATACACATACCATAATTGCTGTTTCACTAGTTTCGCGTAATTTTTCATAGATTGTACCAAGACCAAACTTTCGTTTCATATATCCAAAGCCACCTTCAATCGCTTGTCGAATGGCTTCGTCAAGTCTTTGAATCTTTCGTAGCTGTCGTACTATCTTTTTATTCTCTAATGTTTCTTTAATCGGTCTGCCTAAGGGTGGTCCAGACAATCGTATTCCTCGAGCTTCACAATAGGCTCGGTTTGCTCGTGTCCGATATATTTTATCGGCATGCACCGATTCCGGATATCGACCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCTCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //