Array 1 3098324-3096847 **** Predicted by CRISPRDetect 2.4 *** >NC_016856.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3098323 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3098262 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3098200 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3098139 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3098078 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3098017 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3097956 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3097895 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3097834 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3097773 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3097712 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3097651 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3097590 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3097528 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3097425 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3097364 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3097303 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3097242 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3097181 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3097120 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3097059 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3096998 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3096937 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3096876 29 96.6 0 A............................ | A [3096849] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3116071-3114456 **** Predicted by CRISPRDetect 2.4 *** >NC_016856.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3116070 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3116009 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3115948 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3115887 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3115826 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3115765 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3115704 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3115643 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3115582 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3115521 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3115460 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3115399 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3115338 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3115277 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3115216 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3115155 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3115094 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3115033 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3114971 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3114910 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3114849 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3114788 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3114727 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3114666 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3114605 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3114544 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3114483 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //