Array 1 35091-32812 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBF01000002.1 Campylobacter jejuni strain CB341 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 35090 36 100.0 30 .................................... CTTAGAGTCTTTAATTCATGGCGAAACGCT 35024 36 100.0 30 .................................... AAAGAAGTTAAAAAAATCAGCAAACAACGC 34958 36 100.0 30 .................................... ATATAGGGCTTAGAAAGCCCCCTAAAAATA 34892 36 100.0 31 .................................... AATTAGAGAATGGAGAACACTTATCAGAGCT 34825 36 100.0 30 .................................... GCTTCTTTCAATGTTCTGAGCTGCATCATG 34759 36 100.0 30 .................................... ATGTTTAAATCTCAAAAATTAATCGGTTTA 34693 36 100.0 29 .................................... GCACCTTAACAGGTGCGATTTGCTAGGCT 34628 36 100.0 30 .................................... AATAAAGTTTTTTATCCCCACCGTGATTAC 34562 36 100.0 30 .................................... ATGTTGTCATATTCTTCCTTTAGTTCAGTG 34496 36 100.0 30 .................................... GCCACTACGAGCAATTATTATGGCTAGAAA 34430 36 100.0 30 .................................... GGATACAGGAGAGGTTATAGAGCTTGAATA 34364 36 100.0 30 .................................... ATTTGTGCTAATTAAAAAAGCATTTTTAGT 34298 36 100.0 30 .................................... AAAATTTTTTAAAAAATAGGAGTAAAATTA 34232 36 100.0 30 .................................... CAAAATTTGGAGAACAAATACAAGGAATTG 34166 36 100.0 30 .................................... AAAACCTTTTAAACAAGGTTGCTGAAAAAC 34100 36 100.0 30 .................................... CTAAAAGATTGAGACTTGCACAAAATGAGT 34034 36 100.0 30 .................................... TTTGTAGCTACACTTCTAACGAAGCTTGCT 33968 36 100.0 30 .................................... CGGACAGCAGTGGGAAAGTGTATCTTTACA 33902 36 100.0 30 .................................... AATAGTCAAGCAAAAATGTAAAAAATAGTC 33836 36 100.0 30 .................................... TTAGATTTAAAAGAGAATTATCAGAAAGTC 33770 36 100.0 30 .................................... GAACATAGAAAGGCTTTATAAAAAAGCTTA 33704 36 100.0 30 .................................... GGCTAATGCAAATCAATTCTCAAAATTTTA 33638 36 100.0 30 .................................... ATAGACTTCGGCGACAGCTAGAAGTCTCAT 33572 36 100.0 30 .................................... TGGAGTTGGGGAGAAAATGAGCAATGGATA 33506 36 100.0 30 .................................... ATCCTTTTATGGTGGGTGTTTATAAACTTG 33440 36 100.0 30 .................................... AATGAAACAAGACAATTTATTAAAAATAGT 33374 36 100.0 30 .................................... AACTCAACAGAAGCGATACATAGGAATATA 33308 36 100.0 30 .................................... AAGAAGCAAAACAGACTTTAGAAATTTTAG 33242 36 100.0 30 .................................... AAAAGCAGAACTTGAAACAATTGCTTTAAA 33176 36 100.0 30 .................................... ACTTTTTTTACGGAAAAGGTAACTTTTTTT 33110 36 100.0 30 .................................... GTAAATCCGAAGTATGTCTGTGCTTTCGGC 33044 36 100.0 30 .................................... ATCATTGCACCTATCGGTGCGATTTGCTAA 32978 36 100.0 29 .................................... TTGACTTACAAGCAGAAAACGCAAAACTA 32913 36 100.0 30 .................................... ATTTTAGAAAGAGAATTCATTTTAGAAGTT 32847 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTCACTTTCAAAAGACATGAAAAATACAATCTAAGCGAAGAATGGCTTAAAGCTATTGAAAATTTTATAAGACAAAGAGCTGAAAAAGCGTTAGAATTTATCAAAACTATTTAGATTTATATAATGATAAATGATTTTAGTTTTGATAAATTTGAAATTTATGAAAATTTGGTCTTTAAAAAAATACAGCAAAGATATAGAATAAATTTATAAATATAGCTGATACCTTCAAAGAAGGAATTTAAATAATGAAAAAAGAATAAGCTTCAAATCGCAGAACATATTTTACAAATTTGCTATTGAGGAAATGCTACTACAACCCCTAGTTTTATAGTAGAACATATCCAAGATAAAGACTTTGAAAATTTAAGCTTAAAAAACTTGAAATTTAGGTATAATACTGCTTACTATGTCGTTTCATAGTTAAGCCTTTAGGGTTATTTCCGCCAAGAGTGCAAACTCAAGGCGGGTTTTATTAATCAAATCTTGCTTTTTATTCT # Right flank : ATTCCTTTATCAAATAATGAAATTTTAAAGATTTTCGAGAATTTTTGATGAAAAATAGCAAAATTATGCTACAATATTTACAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTAAAATTCAAATAAATTTTGCTGATGGTATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATACCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //