Array 1 4240014-4241627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013222.1 Salmonella enterica subsp. enterica serovar Anatum strain GT-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4240014 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 4240075 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 4240136 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 4240197 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 4240258 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 4240319 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 4240380 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 4240441 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 4240502 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 4240563 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 4240624 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 4240685 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 4240746 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 4240807 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 4240868 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 4240929 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 4240990 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 4241051 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 4241112 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 4241173 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 4241234 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 4241295 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 4241356 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 4241417 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 4241478 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 4241539 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 4241600 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //